Sfur003636.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr10:2537863-2550623[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.083 1.2e+02 3.2 0.0 21 47 23 49 18 56 0.86 2 16 1.3 1.8e+03 -0.6 0.0 21 47 51 77 47 84 0.80 3 16 0.12 1.6e+02 2.7 0.0 21 48 79 106 71 111 0.85 4 16 0.17 2.4e+02 2.2 0.0 21 47 107 133 104 138 0.86 5 16 0.16 2.2e+02 2.3 0.0 21 48 135 162 132 167 0.85 6 16 0.16 2.3e+02 2.2 0.0 21 48 163 190 161 195 0.85 7 16 0.18 2.5e+02 2.1 0.0 21 47 191 217 189 222 0.85 8 16 0.16 2.2e+02 2.3 0.0 21 48 219 246 216 251 0.85 9 16 0.16 2.2e+02 2.3 0.0 21 48 247 274 244 279 0.85 10 16 0.17 2.4e+02 2.2 0.0 21 47 275 301 272 306 0.86 11 16 0.18 2.5e+02 2.1 0.0 21 47 303 329 301 334 0.85 12 16 0.29 4e+02 1.4 0.0 21 45 331 355 329 361 0.89 13 16 0.0028 3.9 7.9 0.3 14 52 381 419 377 421 0.81 14 16 0.75 1e+03 0.1 0.1 21 44 416 439 412 447 0.70 15 16 0.0082 11 6.4 0.0 21 45 444 468 440 472 0.91 16 16 0.98 1.4e+03 -0.3 0.1 21 40 472 492 469 496 0.72
Sequence Information
- Coding Sequence
- ATGGTTTATATTGAAGAAGAGGCTGAGCCCAAGCAGGAGGATGATTTGAACTCCATCCACATCAAAGATGAGAAGCCTTTCCAATGTGGATTCTGTAATGAATGTTTCTCTGAAGCAAATAAATTGAGAATACATTTAAAAACTCACACTGGAGAGAAGCCTTTCCAGTGTGAATTCTGTGAAAAATGTTTCTCTCACAAAAATAAATTGAAAATACATTTAAGAACACACACTAAAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCGTTTTCAATGTGAAATTTGTGGTAGTTGTTTTTCATATAAACAGGCTTTGACTAGGCATTCAAGAACTCATTCTGTAAACAATTATAATTTTCAATGTGAAATCTGTGATAAATGTTTCATCGATAACAGTAATTTAAGAAAACATTTAAGGATTCACACTGGAGAGAAGCCTTACCAATGTGAAATATGTAGTAAATTTTTCTCACTTAAATTTAAATTGAGTAATCATTTAAGAACTCACACTGGAGAAAAACCATTTCAATGTGAAATTTGTAAAAAATGTTTCGCTCAGAAAAAAAAATTGAAAATTCATTTAAAAACTCACACTGGAGAGCAGCCTTTCCAATGTAAATTCTGTGATAAATGTTTCTCGAGAAGAGCCAGGGACTTGATGAATTGGAGACTGGTACAAAATGCAAAGGATCATTGCAAATTGAAAGCATTACATCTGTTGGTGGTGACAATCTCTCACATGGCTCCACCAATCAACAAGATCTATCACAGACGTCTGAATGTAAATATTGCGTCAATCGTATCTCAGTGGGCAGTGTAG
- Protein Sequence
- MVYIEEEAEPKQEDDLNSIHIKDEKPFQCGFCNECFSEANKLRIHLKTHTGEKPFQCEFCEKCFSHKNKLKIHLRTHTKEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKRFQCEICGSCFSYKQALTRHSRTHSVNNYNFQCEICDKCFIDNSNLRKHLRIHTGEKPYQCEICSKFFSLKFKLSNHLRTHTGEKPFQCEICKKCFAQKKKLKIHLKTHTGEQPFQCKFCDKCFSRRARDLMNWRLVQNAKDHCKLKALHLLVVTISHMAPPINKIYHRRLNVNIASIVSQWAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353952;
- 90% Identity
- iTF_01353952;
- 80% Identity
- iTF_01353952;