Sfur003636.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sogatella furcifera
Gene Symbol
-
Assembly
GCA_014356515.1
Location
chr10:2537863-2550623[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 9.1e-05 0.0047 17.5 2.6 1 23 27 49 27 49 0.99
2 17 2e-05 0.001 19.6 7.8 1 23 55 77 55 77 0.99
3 17 2.5e-07 1.3e-05 25.6 0.7 1 23 83 105 83 105 0.98
4 17 2.5e-07 1.3e-05 25.6 0.7 1 23 111 133 111 133 0.98
5 17 2.5e-07 1.3e-05 25.6 0.7 1 23 139 161 139 161 0.98
6 17 2.5e-07 1.3e-05 25.6 0.7 1 23 167 189 167 189 0.98
7 17 2.5e-07 1.3e-05 25.6 0.7 1 23 195 217 195 217 0.98
8 17 2.5e-07 1.3e-05 25.6 0.7 1 23 223 245 223 245 0.98
9 17 2.5e-07 1.3e-05 25.6 0.7 1 23 251 273 251 273 0.98
10 17 2.5e-07 1.3e-05 25.6 0.7 1 23 279 301 279 301 0.98
11 17 2.5e-07 1.3e-05 25.6 0.7 1 23 307 329 307 329 0.98
12 17 2.5e-07 1.3e-05 25.6 0.7 1 23 335 357 335 357 0.98
13 17 7.5e-06 0.00039 20.9 3.4 1 23 363 385 363 385 0.99
14 17 7.1e-09 3.7e-07 30.5 2.3 1 23 392 414 392 414 0.99
15 17 2e-05 0.001 19.6 3.0 1 23 420 442 420 442 0.99
16 17 2.1e-06 0.00011 22.7 5.0 1 23 448 470 448 470 0.99
17 17 0.099 5.1 8.0 5.0 1 13 476 488 476 489 0.93

Sequence Information

Coding Sequence
ATGGTTTATATTGAAGAAGAGGCTGAGCCCAAGCAGGAGGATGATTTGAACTCCATCCACATCAAAGATGAGAAGCCTTTCCAATGTGGATTCTGTAATGAATGTTTCTCTGAAGCAAATAAATTGAGAATACATTTAAAAACTCACACTGGAGAGAAGCCTTTCCAGTGTGAATTCTGTGAAAAATGTTTCTCTCACAAAAATAAATTGAAAATACATTTAAGAACACACACTAAAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCCTTTCCAGTGTGAAGTCTGTGATAAAAGTTTCTCACAAAAAGTTTATTTGAAAACACATTTAATTATTCATACTGGAGAGAAGCGTTTTCAATGTGAAATTTGTGGTAGTTGTTTTTCATATAAACAGGCTTTGACTAGGCATTCAAGAACTCATTCTGTAAACAATTATAATTTTCAATGTGAAATCTGTGATAAATGTTTCATCGATAACAGTAATTTAAGAAAACATTTAAGGATTCACACTGGAGAGAAGCCTTACCAATGTGAAATATGTAGTAAATTTTTCTCACTTAAATTTAAATTGAGTAATCATTTAAGAACTCACACTGGAGAAAAACCATTTCAATGTGAAATTTGTAAAAAATGTTTCGCTCAGAAAAAAAAATTGAAAATTCATTTAAAAACTCACACTGGAGAGCAGCCTTTCCAATGTAAATTCTGTGATAAATGTTTCTCGAGAAGAGCCAGGGACTTGATGAATTGGAGACTGGTACAAAATGCAAAGGATCATTGCAAATTGAAAGCATTACATCTGTTGGTGGTGACAATCTCTCACATGGCTCCACCAATCAACAAGATCTATCACAGACGTCTGAATGTAAATATTGCGTCAATCGTATCTCAGTGGGCAGTGTAG
Protein Sequence
MVYIEEEAEPKQEDDLNSIHIKDEKPFQCGFCNECFSEANKLRIHLKTHTGEKPFQCEFCEKCFSHKNKLKIHLRTHTKEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKPFQCEVCDKSFSQKVYLKTHLIIHTGEKRFQCEICGSCFSYKQALTRHSRTHSVNNYNFQCEICDKCFIDNSNLRKHLRIHTGEKPYQCEICSKFFSLKFKLSNHLRTHTGEKPFQCEICKKCFAQKKKLKIHLKTHTGEQPFQCKFCDKCFSRRARDLMNWRLVQNAKDHCKLKALHLLVVTISHMAPPINKIYHRRLNVNIASIVSQWAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01354293;
90% Identity
iTF_01354293;
80% Identity
iTF_01354293;