Sate014829.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27433207-27435648[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-07 0.00014 21.4 0.0 4 36 12 44 10 49 0.93 2 3 0.14 96 2.8 0.0 4 31 319 345 319 350 0.91 3 3 0.00012 0.081 12.6 0.0 1 37 465 501 465 505 0.92
Sequence Information
- Coding Sequence
- atggTAAAACGACGGGAAAACTATACTTTAGCCGACTTGAAAGTGGCAGTTGATGCTGTCCGAAGTGGTCAGATGAATTGTTACAGAGCAAGTAAACAATTCAACATTCCACTCAGAACAATTAGAAGACACAGCCTCAAAGACGGAAGTAACAAAGTGGGAAAGCCTCTACTTTTGAACTCGTCGGAAGAGACTGCAATTGTcaaatttgttattgaatGCGCTGAAAGCGGAAACCCAGCAACGAAACGTGAGGTGATTAATGCTGCGATAGAAATTCTTCGACAAAAAAGTGGAAAGCACGAAACTCTTTCAGACAAATGGTATTATGGATTTCTACAACGTCACCCAGAGCtgggaaaacaaaaaacatcaaaagtaTCCAGAGAAAATGACGATTGCAAGAAGGAAGCCTCAGAGAATCCTAAAAGTAACTGCAGACTTTGTCTTGAGCTACTCGAGAATCAAAcagaaagtaaatttgtAATAGGAGATctcgagatgaaaataaacgatATTTTCCCTTCGAATgTTCTTCGATCGCCAACAGCTTCAACGAATTCTCTCTGCATTTCCTGCTTTGCCCAAGTTAATGACTTTCATCACTTCAGATCAACGATCATCCAAAAGCACTCGAACTGCGAACAATTTGAACTttgcgaaattaaaatggaaCAAATCGACTTCAATCCTGTCGTCAACATTTTGgcaattaaagaagaagaattagGAGATTACGAATGGAACGCAGATGACTGGAACAATGTAGCAAACACAGACAACATCGCTGAATTTGATCAACGAGAATTGGAAATTCCTCAACTTTCAAACGATTCTGAAAACGTTTCGATTGAAGTTGATCAAGGAGAATCGAATCCTCAGGCGGATCACGATTTCGAGGAAGTTTTAgaagaaattagaaaaggAGAATTGCAAATTCATCAATTGCAAATCGATCTTGATAACGCATTGAAAGCAATCGACAAAGGATCTTCCATCACTGACGCGGCTTTGAAGTTTAAGATTTCGGAATCACATTTGAAGGATTTTGCCGACAAATCAGCTTCACCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTTTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAActcatttatcaaaactcGACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTGCTTCCAAATGTATTGAGACTAGAATCAAACGCTGATGAGACAACTGATGATCTTCCAGACGACAAAGCTTTAGATAAATCAGAGAACGAAATTGATTGGATCGAGGAGCAAGCTATAAACGCTagaataaaatcattttccgaggaaacaatgaaacttgCATTGAAGGAAGTTGAAAACGGAGCCACTGCCTATAAGACTGCaaagaaatacaaaattgCTTTACGAACGTTGAGTCGCAGGCATAAACTAtgtttaaagagaaaatcgaaagaCCCACAAATTCCTCCCGCATTAGAGATGAGACTTGCCGATTGGATCGTTACTTGTAATGAATTGGGCGACACGAAGAAACACTCTGACATTTGTATGATTGTCTCGCATatctttaaaaatcaaaatcgagGTAGTCCTCCAGCAGTTAAAGCTTGGGTCAATAGCTTCTTGCAGCACCATCCTGAAACTGCAATTGAATTCCAAAAATCAATCTATGAATGCGATGTGTGTGCAAAGGTTTTCACGAATAAGTTTAGTTTAAGAAATCACTTCCTCGCTGTTCACCTCAAAACAAAGTtcgaatttaaatgcaaaatcTGCGAAAAGTCTTTTGCTACAATCTATAGTCTTAAAAATCATGTACTTGAGCAACATCCTGCGGCTGGAAAGccaaagaattttgtttgcgAAATTTGTGCAAAAGGTTTCTACACAAAAAAGAATCTAGGACTTCACGCAGTTCATCacaaggaaaagaaatttcattgcgatTTTGAAGGATGcgtaaagaaatttttaagacCGAAAGAACTCGAGGGTCACAAGCGCAATGATCACTTCGgattgaaagatttcaaatgtGATTTTCCTGGCTGCGACAAAGGTTACAACACCAAGCAAAAACTGATAGCACatcaaaaagagaaacacGAGGAACGAGCGAAGTGTCCAATCAACAATTGCAGTTTTCGTGTAAATCGCGCAGCTTAcatgagaaatcatttgaagagACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattgttaagaaaatgaaattgtcaaCTTGA
- Protein Sequence
- MVKRRENYTLADLKVAVDAVRSGQMNCYRASKQFNIPLRTIRRHSLKDGSNKVGKPLLLNSSEETAIVKFVIECAESGNPATKREVINAAIEILRQKSGKHETLSDKWYYGFLQRHPELGKQKTSKVSRENDDCKKEASENPKSNCRLCLELLENQTESKFVIGDLEMKINDIFPSNVLRSPTASTNSLCISCFAQVNDFHHFRSTIIQKHSNCEQFELCEIKMEQIDFNPVVNILAIKEEELGDYEWNADDWNNVANTDNIAEFDQRELEIPQLSNDSENVSIEVDQGESNPQADHDFEEVLEEIRKGELQIHQLQIDLDNALKAIDKGSSITDAALKFKISESHLKDFADKSASPQEFDRKIANWIITSGEMFDPKTKQNVLDAATHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLPNVLRLESNADETTDDLPDDKALDKSENEIDWIEEQAINARIKSFSEETMKLALKEVENGATAYKTAKKYKIALRTLSRRHKLCLKRKSKDPQIPPALEMRLADWIVTCNELGDTKKHSDICMIVSHIFKNQNRGSPPAVKAWVNSFLQHHPETAIEFQKSIYECDVCAKVFTNKFSLRNHFLAVHLKTKFEFKCKICEKSFATIYSLKNHVLEQHPAAGKPKNFVCEICAKGFYTKKNLGLHAVHHKEKKFHCDFEGCVKKFLRPKELEGHKRNDHFGLKDFKCDFPGCDKGYNTKQKLIAHQKEKHEERAKCPINNCSFRVNRAAYMRNHLKRHTDIDDQELQEYLLIVKKMKLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352558;
- 90% Identity
- iTF_01352565;
- 80% Identity
- iTF_01353247;