Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093831.1:27430637-27433078[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.1e-07 0.00015 21.4 0.0 4 36 12 44 10 49 0.93

2 3 0.0045 3.2 7.5 0.0 4 31 319 345 319 350 0.92

3 3 8.3e-05 0.058 13.1 0.1 1 37 465 501 465 503 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.1e-07	0.00015	21.4	0.0	4	36	12	44	10	49	0.93
2	3	0.0045	3.2	7.5	0.0	4	31	319	345	319	350	0.92
3	3	8.3e-05	0.058	13.1	0.1	1	37	465	501	465	503	0.92

Sequence Information

Coding Sequence: atggTAAAACGACGAGCAAACTATACTTTAGCCGACCTGAAAGTGGCAGTTGATGCTGTCCGAAGTGGTCAGATGACTTGTTACAGAGCAAATAAACAATTCAACATTCCACTCAGAACAATTAGAAGACACAGCCTCAAAGACGGAAGTAACAAAGTGGGAAAGCCTCTACGTCTGAACTCATCggaagaaactgaaattgtcaaatttgttattgaatGCGCTGAAAGCGGAAACCCAGCAACGAAACGTGAGGTGATTAATGCTGCGATAGAAATTCTTCGACGAAAAAATGGAAAGCACGAAACTCTTTCAGAAAAATGGTATTATGGATTTCTACGACGTCACCCAGAGctaggaaaacaaaaagcaacaaaagtGTTCAGAGAAAATGACGATTGCAAGAAGGAAGTCTCAGCGAATCCTAAAAGTAACTGCAGACTTTGTCTTGAGTCGCTCGAGAATCAAACAGAAAGTAAATCAGTGGAAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTgtTCTCCGATTGCCGACAGCTTCATCGAGTTCTCTCTGCATTTCCTGCTACGCCCAAGTTAATGACTTCCATCACTTCAGATCAACGATCATCCAAAAGCACTTGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGGAGCAAATCGACTTCAATCCTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGATTACGAATGGAACGTTGATGACTGGAACAATGAAGCAAACACAGACATCAACACTGAATGTGATCAAAAAGAATTAGAAATTCCTCAACTTTCAAACGATTCTGAAAACGTTTCGATTGAAGTTGATCAAGGAGAATCGAATCCTCAGGCGGATCACGATTTCGAGGAAGTTTTAgaagaaattagaaaaggAGAATTGCAAATTCATCAATTACAAATCGATCTTgacaaagctttaaaagcaaTCGACAAAGGATCTTCCATCACTGACGCAGCATTGAAGTTCAACATTTCGGAATCACATTTGAAGGATTTTGCCGACAAATCAGCTTCACCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTTTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTCAACTTATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTACTTCCAAGTGTCTTGAGTTTAGAATCAAACGCTGATGATACAACTGAGGATCTTCCAGACGACAAAGCTTcagataatttaaaaaacgaAACTGATTGGATCGAGGAGCAAGCTATAAACGCTagaataaaatcattttccgaGGAAACCATGAAACTTGCTTTggaggaaattgaaaacggTGCCACTGCCTATAAGACTGCaaagaaatacaaaattgCTATACGAACGTTGAGTCGCAGacataaactttgtttcaagagaaaattgaaagaccCACAAATTCCTCCCGCATTAGAGATGAGACTTGCCGATTGGATCGTTACTTGTAATGAATTGGGCGACACGAAGAAACACTCTGACATTTGTATGATTGTCTCAAACatctttaaaaatcaaaatcgagGTAGTCCTCCAGCAGTTAAAGCTTGGGTCAATCGTTTCTTGCAGCACCATCCTGAAACTGCAATTGAATTCCAAAAATCAATCTTTGAATGCGATGTGTGTGGAAAGCTTATCACGaataaaattagtttaagAAATCACATCCTCGGTGTTCACCTCAAAACAAAGTtcgaatttaaatgcaaaatcTGCGAGAAGTCTTTTGCAACAATCCATAGTCTTAGAAATCATGTACTTGAGAAACATCCTGCGGCTGGAAAGccaaaaaactttgtttgtgaAGTTTGTGCAAAAAGCTTCTACACAAAAAAGAATCTAGGAGTTCACGCAGTTCATCacaaggaaaagaaatttcattgcgatTTTGAAGGATGcgtaaagaaatttttaagacCGAAAGAACTCGAGGGTCACAAGCGCAATGATCACTACGgattgaaagatttcaaatgtGATTTTCCTGGCTGCGACAAAGGTTACAGCACAAAACAAGTACTGATAGCACATAAAAAGAACTCGCACGAGGAACGAGCGAAATGTCCAGTCAACAATTGCAGTTTTCGTGTAAACTGCGCTGCTTACATGAGAAATCATCTGAAGAGACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattgttaagaaaatgaaattgtcaaCTTGA
Protein Sequence: MVKRRANYTLADLKVAVDAVRSGQMTCYRANKQFNIPLRTIRRHSLKDGSNKVGKPLRLNSSEETEIVKFVIECAESGNPATKREVINAAIEILRRKNGKHETLSEKWYYGFLRRHPELGKQKATKVFRENDDCKKEVSANPKSNCRLCLESLENQTESKSVEGDLEMKINEIFPSNVLRLPTASSSSLCISCYAQVNDFHHFRSTIIQKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNVDDWNNEANTDINTECDQKELEIPQLSNDSENVSIEVDQGESNPQADHDFEEVLEEIRKGELQIHQLQIDLDKALKAIDKGSSITDAALKFNISESHLKDFADKSASPQEFDRKIANWIITSGEMFDPKTKQNVLDAATHLSKLNLSTISNEFNDNWFRSFLKRNPDVLLPSVLSLESNADDTTEDLPDDKASDNLKNETDWIEEQAINARIKSFSEETMKLALEEIENGATAYKTAKKYKIAIRTLSRRHKLCFKRKLKDPQIPPALEMRLADWIVTCNELGDTKKHSDICMIVSNIFKNQNRGSPPAVKAWVNRFLQHHPETAIEFQKSIFECDVCGKLITNKISLRNHILGVHLKTKFEFKCKICEKSFATIHSLRNHVLEKHPAAGKPKNFVCEVCAKSFYTKKNLGVHAVHHKEKKFHCDFEGCVKKFLRPKELEGHKRNDHYGLKDFKCDFPGCDKGYSTKQVLIAHKKNSHEERAKCPVNNCSFRVNCAAYMRNHLKRHTDIDDQELQEYLLIVKKMKLST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01352558;
90% Identity: iTF_01352568; iTF_01353309; iTF_01353247;
80% Identity: iTF_01353309;