Sate014830.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27435777-27438218[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7e-11 4.9e-08 32.5 0.0 4 36 12 44 10 49 0.93 2 3 0.51 3.6e+02 1.0 0.0 4 31 319 345 319 348 0.78 3 3 8.2e-08 5.7e-05 22.7 0.0 1 39 465 502 465 508 0.87
Sequence Information
- Coding Sequence
- atggTAAAACGACGAGCAAATTATACTTTAGCCGACCTGAAAGTGGCAGTTGATGCTGTCCGAAGTGGTCAGATGACGTGTTCCAGAGCAAGTAAACACTTTAATATTCCAAACCAAACAATTAGAAGACACAGTCTCAAAGACGGAAGTAACAAAATGGGAAATCCTCTACGTCTGAACTCATCggaagaaactgaaattgtcaaatttgttattgaatGCGCTGAAAGCGGAAACCCAGCAACGGGACGTGAGGTTATTAATgctgcaataaaaattcttcgacAAAAGAATGGAAAGCACAAAACTCTTTCAGCAAAATGGTATTATGGATTTCTACGACGTCACCCAGAGCtgggaaaacaaaaaacatcaaaagtgTCCAGAGAAAATGACGATTACAAGAAGGAAGCCTCAGAAAATCCTAAAAGTAACTGCAGACTCTGCCTTGAGTCGCTCGAGAATCAAACAGAAAGTAAAACAGTGAAAGGATATctcgagatgaaaataaacgaaattttcccttcgaaTgtTCTCCGATTGCCGACAGCTTCATCGAGTTCTCTCTGCATTTCCTGCTACGCCCAAGTAAATGACTTTCATTACTTCAGATCAACGATCATCCAAAAGCATTTGAACTGCGAACAATTTGAGCTTTGCGAGATTAAAATGGagcaaatcgatttcaatccTGTCGTCAACATTTTGGctataaaagaagaagatttaggAGATTACGAATGGAACGCTGATGACTGGAACAATGAAGCAAACACAGACATCAACACTGAATGTGATCAACGAGAATTAGAAATTCCTCAACTTTCAAACGAttctgaaaacttttcgattgaagTTGATCAAGGAGAATCGAATCCTCAGGCGGATCACGATTTCGAGGAAGTTTTAgaagaaattagaaaaggAGAAGTGCAAATTCATCAATTACAAATCGATCTTGACAAAGCCTTGAAAGCAATCGACAAAGGATCTTTCATCACGGACGCAGCATTGAAGTTCAACATTTCGGAATCACATTTGAAGGATTTTGGCGACAAATCGAGTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGCTTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATCCAAACTCGACTCATCCACGATCccaaatgaattcaatgacAGCTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTTCTGCCAAATGTATTGGATTGGAAACCAATTTCCGATGAATCAACTGAGAATCTTCCACACGACAAAGCTTcagataatttaaaaaacgaAACTGATTGGATCGAAGAACAAGCTGTCAACGCTggaataaaatcatttaccGAGGAAACGATGAAACTTGCTTTGgaggaaattcaaaatgGAGCTAAAATTTGTGCGACTGCAAGGAAATACCAAATTCCTAATCAAACGTTGAGTCGCAGACATAAACTTGGTTTCacgagaaaatcaaaagaacCACAAATTCCTCGCGCATTGGAGACGAGACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACAAAGAAACACTCTGACATTTGTATGATTGTCTCGCATatctttaaaaatcaaaatcgagGTAGTCCTTCAATAGTTAAAGCTTGGGTCAATCGCTTCTTGCAGCACCATCCTGAAACTGCAATTGAATTCCAAAAATCAATCTATGAATGCGATGTGTGtgcaaagcttttcaagaTTAAGTTTAGTTTAAGAAATCACTTCCTCGCTGTTCACCTCAAAACAAAGTtcgaatttaaatgcaaattctgCGAGAAGTCTTTTGCTACAATCCGTAGTCTTAAAAATCATGTACTTGAGCAACATCCTGCGGCTGGAAAGccaaagaattttgtttgtgatgTTTGCGGAATAAGTTTCTACACAAAAAAGAATCTAGGAGTTCACGCAGTTCATCacaaggaaaagaaatttcattgcgatTTTGAAGGATGcgtaaagaaatttttaagacCGAAAGAACTCGAGGGTCACAAGCGCAATGATCACTTCGgattgaaagatttcaaatgtGATTTTCCTGGCTGCGACAAAGGTTACAACACCAAGCAAAAACTGATAGCACatcaaaaagagaaacacGAGGAACGAGCGAAGTGTCCAATCAACAATTGTAGTTTTCGTGTAAATCGCGCAGCTTAcatgagaaatcatttaaagaGACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattgttaagaaaatgaaattgtcaaCTTGA
- Protein Sequence
- MVKRRANYTLADLKVAVDAVRSGQMTCSRASKHFNIPNQTIRRHSLKDGSNKMGNPLRLNSSEETEIVKFVIECAESGNPATGREVINAAIKILRQKNGKHKTLSAKWYYGFLRRHPELGKQKTSKVSRENDDYKKEASENPKSNCRLCLESLENQTESKTVKGYLEMKINEIFPSNVLRLPTASSSSLCISCYAQVNDFHYFRSTIIQKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEANTDINTECDQRELEIPQLSNDSENFSIEVDQGESNPQADHDFEEVLEEIRKGEVQIHQLQIDLDKALKAIDKGSFITDAALKFNISESHLKDFGDKSSSPQEFDRKIANWIITSGEMLDPKTKQNVLDAATHLSKLDSSTIPNEFNDSWFRSFLKRNPDVLLPNVLDWKPISDESTENLPHDKASDNLKNETDWIEEQAVNAGIKSFTEETMKLALEEIQNGAKICATARKYQIPNQTLSRRHKLGFTRKSKEPQIPRALETRLADWIVACNELGDTKKHSDICMIVSHIFKNQNRGSPSIVKAWVNRFLQHHPETAIEFQKSIYECDVCAKLFKIKFSLRNHFLAVHLKTKFEFKCKFCEKSFATIRSLKNHVLEQHPAAGKPKNFVCDVCGISFYTKKNLGVHAVHHKEKKFHCDFEGCVKKFLRPKELEGHKRNDHFGLKDFKCDFPGCDKGYNTKQKLIAHQKEKHEERAKCPINNCSFRVNRAAYMRNHLKRHTDIDDQELQEYLLIVKKMKLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352565; iTF_01352568; iTF_01353309; iTF_01353247; iTF_01353280;
- 90% Identity
- iTF_01353280;
- 80% Identity
- iTF_01353280;