Sate014823.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27412170-27414051[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-10 1e-07 31.5 0.0 3 40 13 50 11 54 0.87 2 4 2.4 1.7e+03 -1.2 0.0 2 23 324 345 323 346 0.83 3 4 0.016 11 5.8 0.0 4 33 347 375 344 386 0.88 4 4 0.00027 0.19 11.4 0.0 1 35 493 527 493 534 0.84
Sequence Information
- Coding Sequence
- atgtcaaagaaacgcaaaattttaaattatagTTCAGAGCAACTAACAGCAGCCCTAGAAGCTATCAAAAGTGGTCAAATGACATGCTATCGAGcagcaaaagaatttaaaattccacTTCAAACATTAAGTGATAAAGTTAAAGGAAAAcatcagaaaaaaattggaaGCCAAACGAGATTGAGCGAAACTGAAGAGTCCGAAATTGTCAAATGGATTCGTGAATGTGCTGAAAGCGGAAAACCAGCACAGAGACGCCAGATTATGAGAGCAGCAGATCAAATTCTCTTGCGTAAGAACACTGAACAAGCTCCTGTCGGTCGTGAATGGTACTATGGGTTCAAGAAGCGTCGTCCAGAATTGAATTATCCCGTAACATCTCAAGTATCTAAAGCAAGTTCTTTCGCTCCACAAGCTGATAATCAAGAATGTCACCCAGAGCtgggaaaacaaaaaacattaaaagtgTTCAGGGACGATTGCCAGAAGGAAGCCTTAGCGAATCCTCAAAGTAGTTGCAGACTTTGCCTAGAGCATCTTGAGAATGTAACAGAAAGTAAATCAGTGAAAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTgtTCTTCGATTGCCGACAGCTTCATTGAATTCTCTCTGCATTCCCTGCTACGCTCAAGTAAATGACTTCCATCACTTCAGATCAACGATCATCCAAAAGCATTTGAACTGCGAACAATTTGAACTttgcgaaattaaaatggaaCAAATCGACTTCAATCCTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGATTACGAATGGAACGCAGATGACTGGAACAATGAAGCTGATGCAGAAATCAACGCTGAATGTGATCATCGAGAATTGGAAATTCCTCAACTGCCAAACAATTTTGATAACGCTTCGATAGGATCTGATCACCAAGAACCAATAATTCCTCAGtcggaaaatgatttcgaggaagttttagaagaaattagaaaaggAGAATTACAAATTCATCAATTGCAAAACGATCTTGACAAAGCTCTaaaggaaattgataaaGGATCTTCCATCACAGACGCAGCATTGAAGTTCAACATTTCGGAATCacatttgaaagattttgagGACAGATCGGTTTCTCTTCAAGAATTTGATcggaaaattgtaaattggATCAAGACTTCTGGCGAATTGTGTGATCCAAAGACGAAGCGAAATGTTCTCGATGCTGCAAATCATTTATCCAAACTCGACTCATCCACGAtctcaaatgaattcaatgacAACTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTACTGCCAAATGTATTGAGTTTAGAATCAAACGCTGATGATACAACTGAGGATCTTCCGGACGACAAAGCTTCAGATAAATCAGAGAACGAAACTGATTGGATCGAGGAACAAGCTATAAAAGctggaaaaaaatcattttccgaGGAAACCATGAAACTTGCATTGAAGGAAGTTGAAAATGGAGCCACTGCCTATTCGATTGCTAAGAAGTACAAAATTCCTAATCAAACGTTAAGTGACAGACAAAAATTTGGAAGCAAGAGAATGTCAAAGCAGCCACTTATTTCTCACGCATTAGAGATGAGACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACGAAGAATCATTCCAACATTTGCGAGATTGCTTCGCATTTtataaaacttcaaaaacgGAAGCTTCGTCCCTCAATTGTCAACACTTGGGTTGATCGCTTTCTAAGACGACATCCTGAGACTTTAATTGAACCTTCAAAGTAA
- Protein Sequence
- MSKKRKILNYSSEQLTAALEAIKSGQMTCYRAAKEFKIPLQTLSDKVKGKHQKKIGSQTRLSETEESEIVKWIRECAESGKPAQRRQIMRAADQILLRKNTEQAPVGREWYYGFKKRRPELNYPVTSQVSKASSFAPQADNQECHPELGKQKTLKVFRDDCQKEALANPQSSCRLCLEHLENVTESKSVKGDLEMKINEIFPSNVLRLPTASLNSLCIPCYAQVNDFHHFRSTIIQKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEADAEINAECDHRELEIPQLPNNFDNASIGSDHQEPIIPQSENDFEEVLEEIRKGELQIHQLQNDLDKALKEIDKGSSITDAALKFNISESHLKDFEDRSVSLQEFDRKIVNWIKTSGELCDPKTKRNVLDAANHLSKLDSSTISNEFNDNWFRSFLKRNPDVLLPNVLSLESNADDTTEDLPDDKASDKSENETDWIEEQAIKAGKKSFSEETMKLALKEVENGATAYSIAKKYKIPNQTLSDRQKFGSKRMSKQPLISHALEMRLADWIVACNELGDTKNHSNICEIASHFIKLQKRKLRPSIVNTWVDRFLRRHPETLIEPSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352555; iTF_01352557;
- 90% Identity
- -
- 80% Identity
- -