Sate014826.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27420414-27422289[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-12 4.7e-09 35.8 0.0 3 44 13 54 11 54 0.96 2 3 0.01 7.2 6.4 0.0 4 31 344 370 344 375 0.92 3 3 6.2e-06 0.0044 16.7 0.0 1 39 490 528 490 533 0.86
Sequence Information
- Coding Sequence
- ATGTCAGAGAAAcgcaaaattttaaattatagTTCAGAGCAACTGACAGCAGCCCTAGAAGCTATTAAAAGTGGCCAAATGACATGCTATAGAGCAGCTCGTCAATTCAAAATACCATGGAATACATTaagtaataaaataaaaggaaaatatcagaaaaaaattggaaGGCAAACGAGATTGAGCGAAACTGAAGAGTCCGAAATTGTCAAATGGATTAGTGAATGTGCTGAAATCGGAAAACCAGCACAGAGACGCCAGATTATGAGAGCAGCAGATCAAATTCTCTTGCGTAAAAACACTGAACAAGCTCCTGTCGGTAGCGATTGGTACTATGGGTTCAAGAAGCGTCATCCAGAATTGAATTATCCCGTAACATCTCAAGTATCTAAAGCAAGTTCTTTCGCTTCACAAGCTGATAATCAAGAATGTCACCCAGATCtgggaaaacaaaaaacattaaaagtgTTCAGGGACGATTGCCAGAAGGAAGCCTTAGCGAATCCTCAAAGTAGTTGCAGACTTTGCCTAGAGAATCTTGAGAATCAAACAGAAAGTAAATCAGTGAATGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTgtTCTTCGATTGCCGACAGCTTCATCGAATTCTCTCTGCATTCCCTGCTACGCCCAAGTAAATGACTTCCATCACTTCAGATCAACGGTCATCCAAAAGCACTTGAACTGCGAGCAATTTGAACTTTGTGAGATTAAAATGGAACAAATCGACTTCAATCCTGTCGTCAACATTTTGGcgattaaagaagaagatttggGAGATTACGAATGGAACGCAGATGACTGGAACAATGTAGCAAACAAAGACAACATCGATGAATGtgatcaaaaagaaatttctcagCTGCCAAACGATTCTGATAACGTTTCGATAGAATCtgaaaaaagagaatcaaTTCCTCAGtcggaaaatgatttcgaggAAGTTTTGGAAGAAATCAGAAAAGGAGAATTgcaaaatcttcaattaCAAATCGATCTTGATAACGCCTTGAAAGCAATTGACAAAGGATCTTCCATCACCGACGCAGCTTTAAAGTTCAACATTTCGGAATCacatttgaaagattttggCGACAGATCGAGTTCTCCTCAAGAATTTGATCgtaaaattgcaaattggATCATAACTTCTGGCGAAATGCTTGATCCAAAgacgaaacaaaatgttctcgATGCTGCTAATCATTTATCCAAACTCGACCCATCCACGAtctcaaatgaattcaatgacAACTGGTTCAGAAGTTTTCTAAAGAGAAATCCTGATGTGCTTCTTGCAAGTGTATTGAGAGAAGAATCAAACGCTGATGAGACAACTGAGGATCCTAAAGATGACAAAGCTTTAGATAATTCAGAGAACGAAACTGATTGGATCGAGGAACAAGCTGTCAACGCTggaataaaatcatttaccGAGGAAACCATGAAACTTGCATTGAAGGAAGTTGAAAACGGAGCCACTACCTATTCGATTGCTaagaaatacaaaatatCTGAAACAACTTTGAGTGACAGACACAAATTTGGAAACAAgggaagaaaatcaaagcaGCCACTTATTACTCTCGCATTAGAGACGAGACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACGAAGAATCATTCCAACATTTGTGAGATTGTTTCGCATTTTATAAAAGTTCAGAAACGGAAGCTTCGTTCCTCAATTGTCAACACTTGGGTTGATCGCTTTTTAAGACGACATCCTGAGACTTTAATTGAACCTTTGAAGTAA
- Protein Sequence
- MSEKRKILNYSSEQLTAALEAIKSGQMTCYRAARQFKIPWNTLSNKIKGKYQKKIGRQTRLSETEESEIVKWISECAEIGKPAQRRQIMRAADQILLRKNTEQAPVGSDWYYGFKKRHPELNYPVTSQVSKASSFASQADNQECHPDLGKQKTLKVFRDDCQKEALANPQSSCRLCLENLENQTESKSVNGDLEMKINEIFPSNVLRLPTASSNSLCIPCYAQVNDFHHFRSTVIQKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNVANKDNIDECDQKEISQLPNDSDNVSIESEKRESIPQSENDFEEVLEEIRKGELQNLQLQIDLDNALKAIDKGSSITDAALKFNISESHLKDFGDRSSSPQEFDRKIANWIITSGEMLDPKTKQNVLDAANHLSKLDPSTISNEFNDNWFRSFLKRNPDVLLASVLREESNADETTEDPKDDKALDNSENETDWIEEQAVNAGIKSFTEETMKLALKEVENGATTYSIAKKYKISETTLSDRHKFGNKGRKSKQPLITLALETRLADWIVACNELGDTKNHSNICEIVSHFIKVQKRKLRSSIVNTWVDRFLRRHPETLIEPLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352561;
- 90% Identity
- -
- 80% Identity
- -