Sate014825.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27417590-27419480[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.6e-13 1.8e-10 40.3 0.1 3 44 13 54 11 55 0.96 2 5 3 2.1e+03 -1.5 0.0 2 22 326 346 325 348 0.82 3 5 0.0034 2.4 7.9 0.0 4 31 349 375 349 380 0.92 4 5 2.1e-05 0.015 15.0 0.0 1 37 495 531 495 538 0.91 5 5 7.5 5.2e+03 -2.8 0.0 31 43 593 605 591 606 0.81
Sequence Information
- Coding Sequence
- atgtCAGAGATAcgaaaaaacattaattataGCTTGGAGCAACTAACAGCAGCCTTAGAAGCTATCAAAAGTGGTCAAATGACTTTTATTAAAGCTGCTCgcgaatttaaaattccagAGCGAACATtgcgaaacaaaattaaaggGAAATATCAGAAGAAAGTTGGAGGACAAACACGCTTGACTGAAGCTGAAGAAACAGAAATCGTCAATTATGTTAATAAATGTGCCACTCGGGGATATCCACGCAACAGAATCGATGTCATGAGAGCTGCAGATAAAATCCTAAATAAAAAGAACGCTAAGCAAGCTCCTGTCGGACGTGATTGGTACACTGGATTCAAGAAACGTCATCCAGAATTGAATTATCGCGTAACATCTCAAGTATCAAAAGCcagttctttcttttcaaaagctgATATTCAAGAATGTCACCCAGAGctggaaaaacaaaaaacattaaaagtgtcgagagaaaaagacGATTGCCAGAAGGAAGTCTCAGCGAATCCTCAAAGTAGTTGCAGACTTTGCCTTGAGCATCTTAAGAATCAAACAGAAAGTAAATCAGTGATAGGAGATCTCgagttaaaaataaacgaaatctTCCCTTCGAATGTTCTCCGATTGCCGACAGCTTCATCGAGTTCTCTCTGCATTCCCTGCTACACCCAAGTGCAAGACTTCCATCACTTCAGATCAACGATCACCAAAAAGCACTTGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGGagcaaatcgattttaatcCTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGATTACGAATGGAACGCAGATGACTGGAACAATGAAGCTCACACAGACAATAACGCTGAATGTGATCAACGAGAATTGGAAATTCCTCAACTGCCAAACAATTTTGATAACGCTTCGATAGGATCTGATCACGAAGAATCAATAATTCCTCAGtcggaaaatgatttcgaggaagttttagaagaaattagaaaaggAGAATTGCAAATTCATCAACTACAAATCGATCTTgataaagctttgaaagcaaTCGACAAAGGATCTTCCATCACCGACGCAGCTTTAAAGTTCAACATTTCGGAATCACATTTGAAGGATTTTGGTGACAGATCGAGTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTTTGATCCAAAGACGAAACGAAATGTTCTCGATGCTGCAACTCATTTATCCAAACTCGACCCATCCACAAtctcaaatgaattcaatgacAACTGGTTCCAAAGttttttaaagagaaatccTGATGTGCTACTTCCAAATGTATTGAGTTTAGAATCAAAAGCTGATAAGACAACTGATGATCCTAAAGATGACAAAGCTTCAGATAATTCAGAGAACGAAACTGATTGGATCGAGGAACAAGCTGTCAACGCTggaataaaatcatttaccGAGGAAACATTGAAACTTGCTTTGGAGGAAGTCAAAAATGGAGCCACTGTCTATTCGATTGCTaagaaatacaaaatatCTGAAAGAACTTTACGTAGCAGACACAAATTTggaagcaaaagaagaaagtctGGCCAGCCACTTATTTCTCACGCATTAGAGACGAGACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACGAAGAATCATTCTAACATTTGCGAGATTATTTCgtattttttaaaagttcagAAACGAGAGCACTGTCCCGCAATTGTCAACACTACGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTTTGAAGTAA
- Protein Sequence
- MSEIRKNINYSLEQLTAALEAIKSGQMTFIKAAREFKIPERTLRNKIKGKYQKKVGGQTRLTEAEETEIVNYVNKCATRGYPRNRIDVMRAADKILNKKNAKQAPVGRDWYTGFKKRHPELNYRVTSQVSKASSFFSKADIQECHPELEKQKTLKVSREKDDCQKEVSANPQSSCRLCLEHLKNQTESKSVIGDLELKINEIFPSNVLRLPTASSSSLCIPCYTQVQDFHHFRSTITKKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEAHTDNNAECDQRELEIPQLPNNFDNASIGSDHEESIIPQSENDFEEVLEEIRKGELQIHQLQIDLDKALKAIDKGSSITDAALKFNISESHLKDFGDRSSSPQEFDRKIANWIITSGEMFDPKTKRNVLDAATHLSKLDPSTISNEFNDNWFQSFLKRNPDVLLPNVLSLESKADKTTDDPKDDKASDNSENETDWIEEQAVNAGIKSFTEETLKLALEEVKNGATVYSIAKKYKISERTLRSRHKFGSKRRKSGQPLISHALETRLADWIVACNELGDTKNHSNICEIISYFLKVQKREHCPAIVNTTVDRFLRRHPETLIEPLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352561;
- 90% Identity
- -
- 80% Identity
- -