Sory011387.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- clz9
- Assembly
- GCA_002938485.2
- Location
- NW:7956137-7959782[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-07 7.6e-05 22.0 0.0 2 39 71 108 70 113 0.90
Sequence Information
- Coding Sequence
- ATGGATAGGTCGATGTGCACAATTTTAGTTCTACTTGATCAAAGCAAGGCCTTTGATCTGGTTAACTTCGAGTTAATGCTGGCTAAGCTTAACTTTATTGGATTTGATGGTGCTGCTCTGGCCTGGTTTAAGGATTACCTATACGGGAGATGTCAACGTGTTACAatGGTAAGAACTTATAAACACCGTACAGATAGACGCTCTTGGTCAGAAGACGTGCTTATTGCCGCGTTGCACTCTATTTTGCACGACCATAAGTCAGTTAATGCTGCCAGTATTGAGCATGGAATCCCGGAAGCAACATTAAGACGTtatataaaaaagcaaaataacaaCGAACCAATTCCTCTTAGTGGTGGGAGATTCAGAAGAACGTTTTCTGATGCTCAGGAAGCTCAGTTTGTGACCTACCTAACTGACCTGAGTATTAGAGCATTTGGAATTACATCAGTACAATTTAGAAAACTAGCCTACGAATTCGCTGAACTTAACAACATAAACCATCAGTTCTGCAAAACCACAAAATTGGCAGGCACGGACTGGCTTAAGTCGTTCATGAGTAGACATAGGATAAGTCTTAGGACCCCAGAGTCGACTTCGCTGGGACGATTATTCGGATTTAATAAAGTTGAAGTAACTAGATTTTTTGAGTTACTTAGAGAAACTagattaaaatacaattttactgCTGACCGCATTTATAATGCAGATGAATCGGGATTATCAACGGTTCCCAATAAAAAGCCAAAGATTTTATCGCCCACTGGTTCTAGGAGAGTATCAAAAGTTGCTAGTGGTGAGCGTGGAAAAAACACCACCGTTGTATGTGCCATGAACGCCCAAGGGAGCTACGTTCcacccttttttatttttggaagagTTAGGATGCGACCAGATCTTTTAAATGGATGTCCTCCAAACTCTGCTGGTATAGCTCAACCCAGTGGATGGATGAATACAGAAGCCTTTGTCCTATACCTTAAACATTTCGTGAAATTTGTTCGCCCAAACACAGAGACACCCGTATTGTTGATCGTTGACAATCACTCGTCTCACACTTCACTGGAAGCTATCAATTATTGTAGGGATAATGGAGTGGTTATGTTGGGACTACCCCCGCACAGTACCCACCGCCTACAACCGTTGGACGTTGGGTTTTTTGGACCTCTCAAGACTTTCTATAGCCAGACTTGTGATAACTATTTGGTAAACCACCCGGGAAAACAAATCACCGATAAAGAAGTTGGTAGGTTGTTCGGGCAAGCTTATCTAAGGGCTGCAACTGTGGGAACAGctataaaaagtttttccgcTTGCGGCATTGAGCCTTTTAATGCTGAAATCTTTGGAGATTCCGATTTTGCGCCTTCTATGGTGAGTGAGAGGCACGTAACTGCGGACAACGAGTTCTTAAGCAGTGACGATGAACCACTAGCAGTTCCTGGGTCTTCAGGCTCAAATAGAATTGATCAagccaaaacaaaaaacaatgaAATACAAGATGGTAAACCACCAGCGGTTTTCAACAAAACTGAGCCAGAAAAGCTTGTGAATTTAATTCTCCCAGGACCCTCAGGATTGAATAAAATGGATTCTGCAAAGAATAAAAACTATGAAACACCAGATGTTGAACCCCCATtgctttccaaaaaaaatcagccGGCAAGGTCAATGAATTTGTCCCTTCCTGGACCTTCAGGCCTACAGCAAAAAAAATCTGCAAAAAACAATGAAGCACAAGCTCTTGGCACTATGAGTTCATCCAGCTCCAGTCAAACAATCTCTAATGTTGATAGTCGAGTTACGCTACTTGAAATGAGACCCTTTCCCAAATATACACGTCCCATAAAAACTACCAAAAGAATTAAACAAAGGGCTTCTGTTATCACCTCAACACCCAACAAAGAAGAACAGGAAagaaaaaacaatgaaaaaaacttaaaagaaattaaaagaagGAAGGTTGATTCTGTGAAAGTCAAGAgaaatgtatttcaagaaaatcgtGAAAAGCAGGTaggaaagaagaagaaaactaatgacattttttgtcCTGGCTGCCAGGAATCCTATATTGAGCCTCCTACAGAAGACTGGATTCAATGTAACACGTGCGAGAGTTGGTGGCACGAGTCGTGCACAGCCTACGAAAAAGATGGCACATATACCTGCGACATTTGTTTATAA
- Protein Sequence
- MDRSMCTILVLLDQSKAFDLVNFELMLAKLNFIGFDGAALAWFKDYLYGRCQRVTMVRTYKHRTDRRSWSEDVLIAALHSILHDHKSVNAASIEHGIPEATLRRYIKKQNNNEPIPLSGGRFRRTFSDAQEAQFVTYLTDLSIRAFGITSVQFRKLAYEFAELNNINHQFCKTTKLAGTDWLKSFMSRHRISLRTPESTSLGRLFGFNKVEVTRFFELLRETRLKYNFTADRIYNADESGLSTVPNKKPKILSPTGSRRVSKVASGERGKNTTVVCAMNAQGSYVPPFFIFGRVRMRPDLLNGCPPNSAGIAQPSGWMNTEAFVLYLKHFVKFVRPNTETPVLLIVDNHSSHTSLEAINYCRDNGVVMLGLPPHSTHRLQPLDVGFFGPLKTFYSQTCDNYLVNHPGKQITDKEVGRLFGQAYLRAATVGTAIKSFSACGIEPFNAEIFGDSDFAPSMVSERHVTADNEFLSSDDEPLAVPGSSGSNRIDQAKTKNNEIQDGKPPAVFNKTEPEKLVNLILPGPSGLNKMDSAKNKNYETPDVEPPLLSKKNQPARSMNLSLPGPSGLQQKKSAKNNEAQALGTMSSSSSSQTISNVDSRVTLLEMRPFPKYTRPIKTTKRIKQRASVITSTPNKEEQERKNNEKNLKEIKRRKVDSVKVKRNVFQENREKQVGKKKKTNDIFCPGCQESYIEPPTEDWIQCNTCESWWHESCTAYEKDGTYTCDICL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351629;
- 90% Identity
- iTF_01351629; iTF_01351630; iTF_01351631; iTF_01351632; iTF_01351633; iTF_01351634; iTF_01351635; iTF_01351639; iTF_01351638;
- 80% Identity
- iTF_01351630;