Basic Information

Insect: Sitophilus oryzae
Gene Symbol: clz9
Assembly: GCA_002938485.2
Location: NW:566744-569242[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.4e-07 6.9e-05 22.2 0.0 2 39 16 53 15 58 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.4e-07	6.9e-05	22.2	0.0	2	39	16	53	15	58	0.90

Sequence Information

Coding Sequence: atGGTAAGAACTTATAAACACCGTACAGATAGACGCTCTTGGTCAGAAGACGTGCTTATTGCCGCGTTGCACTCTATTTTGCACGACCATAAGTCAGTTAATGCTGCCAGTATTGAGCATGGAATCCCGGAAGCAACATTAAGACGTtatataaaaaagcaaaataacaaCGAACCAATTCCTCTTAGTGGTGGGAGATTCAGAAGAACGTTTTCTGATGCTCAGGAAGCTCAGTTTGTGACCTACCTAACTGACCTGAGTATTAGAGCATTTGGAATTACATCAGTACAATTTAGAAAACTAGCCTACGAATTCGCTGAACTTAACAACATAAACCATCAGTTCTGCAAAACCACAAAATTGGCAGGCACGGACTGGCTTAAGTCGTTCATGAGTAGACATAGGATAAGTCTTAGGACCCCAGAGTCGACTTCGCTGGGACGATTATTCGGATTTAATAAAGTTGAAGTAACTAGATTTTTTGAGTTACTTAGAGAAACTagattaaaatacaattttactgCTGACCGCATTTATAATGCAGATGAATCGGGATTATCAACGGTTCCCAATAAAAAGCCAAAGATTTTATCGCCCACTGGTTCTAGGAGAGTATCAAAAGTTGCTAGTGGTGAGCGTGGAAAAAACACCACCGTTGTATGTGCCATGAACGCCCAAGGGAGCTACGTTCcacccttttttatttttggaagagTTAGGATGCGACCAGATCTTTTAAATGGATGTCCTCCAAACTCTGCTGGTATAGCTCAACCCAGTGGATGGATGAATACAGAAGCCTTTGTCCTATACCTTAAACATTTCGTGAAATTTGTTCGCCCAAACACAGAGACACCCGTATTGTTGATCGTTGACAATCACTCGTCTCACACTTCACTGGAAGCTATCAATTATTGTAGGGATAATGGAGTGGTTATGTTGGGACTACCCCCGCACAGTACCCACCGCCTACAACCGTTGGACGTTGGGTTTTTTGGACCTCTCAAGACTTTCTATAGCCAGACTTGTGATAACTATTTGGTAAACCACCCGGGAAAACAAATCACCGATAAAGAAGTTGGTAGGTTGTTCGGGCAAGCTTATCTAAGGGCTGCAACTGTGGGAACAGctataaaaagtttttccgcTTGCGGCATTGAGCCTTTTAATGCTGAAATCTTTGGAGATTCCGATTTTGCGCCTTCTATGGTGAGTGAGAGGCACGTAACTGCGGACAACGAGTTCTTAAGCAGTGACGATGAACCACTAGCAGTTCCTGGGTCTTCAGGCTCAAATAGAATTGATCAagccaaaacaaaaaacaatgaAATACAAGATGGTAAACCACCAGCGGTTTTCAACAAAACTGAGCCAGAAAAGCTTGTGAATTTAATTCTCCCAGGACCCTCAGGATTGAATAAAATGGATTCTGCAAAGAATAAAAACTATGAAACACCAGATGTTGAACCCCCATtgctttccaaaaaaaatcagccGGCAAGGTCAATGAATTTGTCCCTTCCTGGACCTTCAGGCCTACAGCAAAAAAAATCTGCAAAAAACAATGAAGCACAAGCTCTTGGCACTATGAGTTCATCCAGCTCCAGTCAAACAATCTCTAATGTTGATAGTCGAGTTACGCTACTTGAAATGAGACCCTTTCCCAAATATACACGTCCCATAAAAACTACCAAAAGAATTAAACAAAGGGCTTCTGTTATCACCTCAACACCCAACAAAGAAGAACAGGAAagaaaaaacaatgaaaaaaacttaaaagaaattaaaagaagGAAGGTTGATTCTGTGAAAGTCAAGAgaaatgtatttcaagaaaatcgtGAAAAGCAGGTaggaaagaagaagaaaactaatgacattttttgtcCTGGCTGCCAGGAATCCTATATTGAGCCTCCTACAGAAGACTGGATTCAATGTAACACGTGCGAGAGTTGGTGGCACGAGTCGTGCACAGCCTACGAAAAAGATGGCACATATACCTGCGACATTTGTTTATAA
Protein Sequence: MVRTYKHRTDRRSWSEDVLIAALHSILHDHKSVNAASIEHGIPEATLRRYIKKQNNNEPIPLSGGRFRRTFSDAQEAQFVTYLTDLSIRAFGITSVQFRKLAYEFAELNNINHQFCKTTKLAGTDWLKSFMSRHRISLRTPESTSLGRLFGFNKVEVTRFFELLRETRLKYNFTADRIYNADESGLSTVPNKKPKILSPTGSRRVSKVASGERGKNTTVVCAMNAQGSYVPPFFIFGRVRMRPDLLNGCPPNSAGIAQPSGWMNTEAFVLYLKHFVKFVRPNTETPVLLIVDNHSSHTSLEAINYCRDNGVVMLGLPPHSTHRLQPLDVGFFGPLKTFYSQTCDNYLVNHPGKQITDKEVGRLFGQAYLRAATVGTAIKSFSACGIEPFNAEIFGDSDFAPSMVSERHVTADNEFLSSDDEPLAVPGSSGSNRIDQAKTKNNEIQDGKPPAVFNKTEPEKLVNLILPGPSGLNKMDSAKNKNYETPDVEPPLLSKKNQPARSMNLSLPGPSGLQQKKSAKNNEAQALGTMSSSSSSQTISNVDSRVTLLEMRPFPKYTRPIKTTKRIKQRASVITSTPNKEEQERKNNEKNLKEIKRRKVDSVKVKRNVFQENREKQVGKKKKTNDIFCPGCQESYIEPPTEDWIQCNTCESWWHESCTAYEKDGTYTCDICL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01351629;
90% Identity: iTF_01351636;
80% Identity: iTF_01351631; iTF_01351632; iTF_01351633; iTF_01351636; iTF_01351629; iTF_01351634;