Sory005774.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sitophilus oryzae
Gene Symbol
clz9
Assembly
GCA_002938485.2
Location
NW:871786-878176[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.5e-07 9e-05 21.8 0.0 2 39 186 223 185 228 0.90

Sequence Information

Coding Sequence
ATGGCCCTAAGGATCTGTTCAGCGTATCGTACGATATCAAGAGATGCCCTGTTGGTTATAGCTGGGCCGATCCCGCTGCATTTAGCAGCTGAGGAAAACAACGACGAGGTACCTATCAAAAAATGGCAAGAGGAGTGGGATACATCCGACAAAGGAAGGTGGACTAGAAAGTTAATACACAACGTGGAGGACTGGACAAGTAGGAAATACGGAGACGTGGACTATTACATTAGGCAGTTTCTTTCCGGGCATGGAGTCCTCATGGACTTCTTGCACAGAATAAAGAAAATACCAAATGGCAACTGCATGTACTCCGACGAAATCGACGATGCCGAGCATACGTTGTTCTGCTGTCCAAGATGGGAAAACGGAAGGTCTGCCTTATTGTCGGATGTAGGAATGATAACTTCGGACACCTTGATTATGAAAATGACCAAAACTAGCGAAATATGGGGAAAGGTAGGGGCATTtatgaaagaaataataatagagaAAGGAAAAGATGAAAAGatGGTAAGAACTTATAAACACCGTACAGATAGACGCTCTTGGTCAGAAGACGTGCTTATTGCCGCGTTGCACTCTATTTTGCACGACCATAAGTCAGTTAATGCTGCCAGTATTGAGCATGGAATCCCGGAAGCAACATTAAGACGTtatataaaaaagcaaaataacaaCGAACCAATTCCTCTTAGTGGTGGGAGATTCAGAAGAACGTTTTCTGATGCTCAGGAAGCTCAGTTTGTGACCTACCTAACTGACCTGAGTATTAGAGCATTTGGAATTACATCAGTACAATTTAGAAAACTAGCCTACGAATTCGCTGAACTTAACAACATAAACCATCAGTTCTGCAAAACCACAAAATTGGCAGGCACGGACTGGCTTAAGTCGTTCATGAGTAGACATAGGATAAGTCTTAGGACCCCAGAGTCGACTTCGCTGGGACGATTATTCGGATTTAATAAAGTTGAAGTAACTAGATTTTTTGAGTTACTTAGAGAAACTagattaaaatacaattttactgCTGACCGCATTTATAATGCAGATGAATCGGGATTATCAACGGTTCCCAATAAAAAGCCAAAGATTTTATCGCCCACTGGTTCTAGGAGAGTATCAAAAGTTGCTAGTGGTGAGCGTGGAAAAAACACCACCGTTGTATGTGCCATGAACGCCCAAGGGAGCTACGTTCcacccttttttatttttggaagagTTAGGATGCGACCAGATCTTTTAAATGGATGTCCTCCAAACTCTGCTGGTATAGCTCAACCCAGTGGATGGATGAATACAGAAGCCTTTGTCCTATACCTTAAACATTTCGTGAAATTTGTTCGCCCAAACACAGAGACACCCGTATTGTTGATCGTTGACAATCACTCGTCTCACACTTCACTGGAAGCTATCAATTATTGTAGGGATAATGGAGTGGTTATGTTGGGACTACCCCCGCACAGTACCCACCGCCTACAACCGTTGGACGTTGGGTTTTTTGGACCTCTCAAGACTTTCTATAGCCAGACTTGTGATAACTATTTGGTAAACCACCCGGGAAAACAAATCACCGATAAAGAAGTTGGTAGGTTGTTCGGGCAAGCTTATCTAAGGGCTGCAACTGTGGGAACAGctataaaaagtttttccgcTTGCGGCATTGAGCCTTTTAATGCTGAAATCTTTGGAGATTCCGATTTTGCGCCTTCTATGGTGAGTGAGAGGCACGTAACTGCGGACAACGAGTTCTTAAGCAGTGACGATGAACCACTAGCAGTTCCTGGGTCTTCAGGCTCAAATAGAATTGATCAagccaaaacaaaaaacaatgaAATACAAGATGGTAAACCACCAGCGGTTTTCAACAAAACTGAGCCAGAAAAGCTTGTGAATTTAATTCTCCCAGGACCCTCAGGATTGAATAAAATGGATTCTGCAAAGAATAAAAACTATGAAACACCAGATGTTGAACCCCCATtgctttccaaaaaaaatcagccGGCAAGGTCAATGAATTTGTCCCTTCCTGGACCTTCAGGCCTACAGCAAAAAAAATCTGCAAAAAACAATGAAGCACAAGCTCTTGGCACTATGAGTTCATCCAGCTCCAGTCAAACAATCTCTAATGTTGATAGTCGAGTTACGCTACTTGAAATGAGACCCTTTCCCAAATATACACGTCCCATAAAAACTACCAAAAGAATTAAACAAAGGGCTTCTGTTATCACCTCAACACCCAACAAAGAAGAACAGGAAagaaaaaacaatgaaaaaaacttaaaagaaattaaaagaagGAAGGTTGATTCTGTGAAAGTCAAGAgaaatgtatttcaagaaaatcgtGAAAAGCAGGTaggaaagaagaagaaaactaatgacattttttgtcCTGGCTGCCAGGAATCCTATATTGAGCCTCCTACAGAAGACTGGATTCAATGTAACACGTGCGAGAGTTGGTGGCACGAGTCGTGCACAGCCTACGAAAAAGATGGCACATATACCTGCGACATTTGTTTATAA
Protein Sequence
MALRICSAYRTISRDALLVIAGPIPLHLAAEENNDEVPIKKWQEEWDTSDKGRWTRKLIHNVEDWTSRKYGDVDYYIRQFLSGHGVLMDFLHRIKKIPNGNCMYSDEIDDAEHTLFCCPRWENGRSALLSDVGMITSDTLIMKMTKTSEIWGKVGAFMKEIIIEKGKDEKMVRTYKHRTDRRSWSEDVLIAALHSILHDHKSVNAASIEHGIPEATLRRYIKKQNNNEPIPLSGGRFRRTFSDAQEAQFVTYLTDLSIRAFGITSVQFRKLAYEFAELNNINHQFCKTTKLAGTDWLKSFMSRHRISLRTPESTSLGRLFGFNKVEVTRFFELLRETRLKYNFTADRIYNADESGLSTVPNKKPKILSPTGSRRVSKVASGERGKNTTVVCAMNAQGSYVPPFFIFGRVRMRPDLLNGCPPNSAGIAQPSGWMNTEAFVLYLKHFVKFVRPNTETPVLLIVDNHSSHTSLEAINYCRDNGVVMLGLPPHSTHRLQPLDVGFFGPLKTFYSQTCDNYLVNHPGKQITDKEVGRLFGQAYLRAATVGTAIKSFSACGIEPFNAEIFGDSDFAPSMVSERHVTADNEFLSSDDEPLAVPGSSGSNRIDQAKTKNNEIQDGKPPAVFNKTEPEKLVNLILPGPSGLNKMDSAKNKNYETPDVEPPLLSKKNQPARSMNLSLPGPSGLQQKKSAKNNEAQALGTMSSSSSSQTISNVDSRVTLLEMRPFPKYTRPIKTTKRIKQRASVITSTPNKEEQERKNNEKNLKEIKRRKVDSVKVKRNVFQENREKQVGKKKKTNDIFCPGCQESYIEPPTEDWIQCNTCESWWHESCTAYEKDGTYTCDICL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01351629;
90% Identity
iTF_01351636;
80% Identity
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