Basic Information

Insect: Sitodiplosis mosellana
Gene Symbol: -
Assembly: GCA_009176505.1
Location: VUAH01000002.1:5788834-5798159[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.5e-06 0.00051 20.5 2.4 1 23 281 303 281 303 0.98

2 18 2.1e-05 0.0013 19.2 0.1 1 23 309 331 309 331 0.97

3 18 0.00016 0.0096 16.4 0.3 1 23 337 359 337 359 0.98

4 18 0.00047 0.028 15.0 3.0 3 23 367 387 365 387 0.98

5 18 0.00017 0.0099 16.4 7.9 1 23 393 415 393 415 0.99

6 18 1.1e-05 0.00066 20.1 4.2 1 23 421 443 421 443 0.98

7 18 1.8e-06 0.00011 22.6 5.2 1 23 449 471 449 471 0.98

8 18 7.2e-07 4.3e-05 23.8 4.9 1 23 477 499 477 499 0.97

9 18 7.8e-05 0.0046 17.4 6.7 1 23 505 527 505 527 0.97

10 18 0.00054 0.032 14.8 7.1 1 23 533 555 533 555 0.98

11 18 3.4e-06 0.0002 21.7 3.0 1 23 561 583 561 583 0.98

12 18 3.1e-05 0.0019 18.7 7.1 1 23 589 611 589 611 0.97

13 18 5.8e-06 0.00035 21.0 3.6 1 23 617 639 617 639 0.98

14 18 2.7e-05 0.0016 18.9 7.9 1 23 645 667 645 667 0.97

15 18 3.4e-06 0.0002 21.7 0.4 2 21 674 693 673 694 0.95

16 18 0.00016 0.0095 16.5 0.4 1 23 704 726 704 726 0.97

17 18 1.3e-05 0.00076 19.9 1.7 1 23 736 758 736 758 0.98

18 18 4.3e-05 0.0026 18.2 0.4 3 23 766 787 764 787 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.5e-06	0.00051	20.5	2.4	1	23	281	303	281	303	0.98
2	18	2.1e-05	0.0013	19.2	0.1	1	23	309	331	309	331	0.97
3	18	0.00016	0.0096	16.4	0.3	1	23	337	359	337	359	0.98
4	18	0.00047	0.028	15.0	3.0	3	23	367	387	365	387	0.98
5	18	0.00017	0.0099	16.4	7.9	1	23	393	415	393	415	0.99
6	18	1.1e-05	0.00066	20.1	4.2	1	23	421	443	421	443	0.98
7	18	1.8e-06	0.00011	22.6	5.2	1	23	449	471	449	471	0.98
8	18	7.2e-07	4.3e-05	23.8	4.9	1	23	477	499	477	499	0.97
9	18	7.8e-05	0.0046	17.4	6.7	1	23	505	527	505	527	0.97
10	18	0.00054	0.032	14.8	7.1	1	23	533	555	533	555	0.98
11	18	3.4e-06	0.0002	21.7	3.0	1	23	561	583	561	583	0.98
12	18	3.1e-05	0.0019	18.7	7.1	1	23	589	611	589	611	0.97
13	18	5.8e-06	0.00035	21.0	3.6	1	23	617	639	617	639	0.98
14	18	2.7e-05	0.0016	18.9	7.9	1	23	645	667	645	667	0.97
15	18	3.4e-06	0.0002	21.7	0.4	2	21	674	693	673	694	0.95
16	18	0.00016	0.0095	16.5	0.4	1	23	704	726	704	726	0.97
17	18	1.3e-05	0.00076	19.9	1.7	1	23	736	758	736	758	0.98
18	18	4.3e-05	0.0026	18.2	0.4	3	23	766	787	764	787	0.97

Sequence Information

Coding Sequence: ATGGCTTCGATTCCAACTTTAGGAGGGCATCATTTGGTGaatcagcagcagcacaatAGCATGCAAAATAATAGCGGCACTTCGTTACCGCCGAATTCGCAACAGTTGCAAGAACGTCACTCGCAAATCAATCAGCAGCCACCTGAACCGGTCAATAACGTCCGATTGGACGGTAATCCGAAAAAGCGTATGCTatcgcagcagcagcatcaaatGCAATCGCAGCAAATGCCGCATCACCAAGAGCATCAAATCACTCAACATGTGGCTCAATCTGGCCTACCAATCCCGATTCATCATCCGATCAGCCAATTGTTTGCCATTGATCCGCACACCCAGCAGACGATTAAAACggaaaatgataataaattcTATCATTTTCCATCGCATTCAATGGGTAAACCGCAGATTTTATCGGACACCAAATTGCCGCCAGCGCAAATGTTTGACGTTCGTAACGCGGATGGGCAAATTGTGCACGTGAATATCGAGGATATCAATCAGTTTTTAACGTATCACGAAGTGTTTGGAAAAATTGGATCAGATCATGCATTTCCTCCCACATCGAACTCACTCGCAATTCCACCAATTAATGCTTCCGTACCGGTATCGAATGCACAGTCAACGTCCATTCCACCGGCCTCGATTAATCCGACCAATTCACAGTCGCAATCAACACCATTGATCATACCGAAAATCGAGAATATCAACACATCCGGTTCGAATACGAATTCAGTGTCGGTCAGCACCACATCAAATGTTACAAACAATTCAACGACGTCAACATGCGTCACAGCTGGCGGCAGCGATGATTCAACGACAATGCCATCGCCAGGCATGCACACTTGCGATATTTGTGGAAAAGTGTTTGCCTTCAAATACCAATTCATTGTTCATCGTCGCTATCATAACGAACGTAAGCCATTCATTTGCCAAGTATGTGGCCAAGCATTCACAACTTCCGTTGATCTAACATCACATGGTAAAATCCACGAAGGAGTCAAAATGTTCATATGCAATGTGTGTTATAATGTGTTTGCGAACGATGCTAGTCTGGAACGGCATATGAAACGACACTCCACTGATAAGCCATTTGGTTGTACGGTTTGCCAGAAGACGTTCGGGAGGAAAGAACACTTGGACAATCATTTCCGATCTCACAGCGGGGAAACACCTTTTCGgTGCCAGTATTGCGCTAAGTGTTTTACTCGTCGTGAACATATGCAGAATCACGTCAGGAAGCACACTGGAGACACGCCGTTCAAATGTgacatttgcaaaaaatcgTTCACAAGGAAAGAGCATTACGTCAATCACTATATGTGGCACACAGGCGAAACTCCGCATACATGCAATGTCTGTGGCAAGAAATACACTCGCAAAGAACATTTGGCCAACCATCAACGCTcgcacacaaatgaaaaccCGTTCCGGTGTGAAATATGCGGCAAATGCTTCAGCCGCAAGGAACATTTCACTAATCATATTTTGTGGCATACTGGAGAGACACCACATCGTTGCGATTTCTGCTCCAAAACATTTACTCGCAAAGAGCATCTCTTGAACCATGTCAGGCAACACACAAACGAATCTCCGCATCGATGCTCTTACTGCATGAAATCATTCACAAGACGTGAACATCTCATCAATCACACCAGACAGCACACAGGAGAGACACCGTTTAAGTGCGAATTTTGCCCGAAAGCATTTGCACGAAAAGATCATCTAAACAATCACAGAAATCAACACACTGGCCAGTCGCTACATAAATGTGTCTATTGCAGCAAGAGCTTTTCGCGCAAGGAACACTTGAAAAATCATCAAGTCAAACACACTGGCATTTCTCCGTATCAGtgtAAATTTTGTAACAAGATTTTCTCTCGACGAGAACATTTGAATAATCATGAGATGATTCACACCGGTCAATCTCCTCATAAATGTGTTTATTGTGACAAGGCATTCACACGCAAAGAGCACCTAAATAACCATTTGAAGCATCATTCCCCCGATAATCCGTTGATCTGTACGGTATGCAACAAGTCGTTCTCGAGAAAAGAGTCGCTAGTCAATCATATGAGGTTTGTTCGATGCCATACGGGAGAGCGTCCATATGCATGTGAAACATGTGGAAAATCATTTCCACTGAAAGGAAATTTGCTCTTTCATCAACGTAGCCATAACAAGGGTGTGAAAGCAGAACGACCGTTCCGTTGCGATCTTTGCCCAAAGGACTTCATTTCGAAAGGGCACTTAGTGAGTCATAGACGATCGCACACCGGAGAGAAGCCATTCGGCTGCAGCCAATGTGGCAAAGCATTCATTGGGAAAGGAAACCTTTTGCGACACGTTAAGAAGACACATCCGAATATCACGGATGTTCAGAGCATTATGATGCAAGCAAAAGCAAAGGCAAAGTTAGCAACCAGCTCGAGCATTGCGACGGTGAGCAATCAAACCACATCGACAACATCAATGCCACCGTCTTCGGTGCCGGCAGTCGTAACATCGGCAATGACCACCCAACCGATGCACAGTGGCCCAGCTGGTATCCATTCTGGGCCCATACAAACGGCCGCACCATCAAATCCACAACAACAATCTCAGCCTCAGCCGCACAACATCGTTGCACCGCATATTCCAATCCTAATGGATCCTCTGGTACAGAGTAACTACTTAATTAGCATCTAA
Protein Sequence: MASIPTLGGHHLVNQQQHNSMQNNSGTSLPPNSQQLQERHSQINQQPPEPVNNVRLDGNPKKRMLSQQQHQMQSQQMPHHQEHQITQHVAQSGLPIPIHHPISQLFAIDPHTQQTIKTENDNKFYHFPSHSMGKPQILSDTKLPPAQMFDVRNADGQIVHVNIEDINQFLTYHEVFGKIGSDHAFPPTSNSLAIPPINASVPVSNAQSTSIPPASINPTNSQSQSTPLIIPKIENINTSGSNTNSVSVSTTSNVTNNSTTSTCVTAGGSDDSTTMPSPGMHTCDICGKVFAFKYQFIVHRRYHNERKPFICQVCGQAFTTSVDLTSHGKIHEGVKMFICNVCYNVFANDASLERHMKRHSTDKPFGCTVCQKTFGRKEHLDNHFRSHSGETPFRCQYCAKCFTRREHMQNHVRKHTGDTPFKCDICKKSFTRKEHYVNHYMWHTGETPHTCNVCGKKYTRKEHLANHQRSHTNENPFRCEICGKCFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTNESPHRCSYCMKSFTRREHLINHTRQHTGETPFKCEFCPKAFARKDHLNNHRNQHTGQSLHKCVYCSKSFSRKEHLKNHQVKHTGISPYQCKFCNKIFSRREHLNNHEMIHTGQSPHKCVYCDKAFTRKEHLNNHLKHHSPDNPLICTVCNKSFSRKESLVNHMRFVRCHTGERPYACETCGKSFPLKGNLLFHQRSHNKGVKAERPFRCDLCPKDFISKGHLVSHRRSHTGEKPFGCSQCGKAFIGKGNLLRHVKKTHPNITDVQSIMMQAKAKAKLATSSSIATVSNQTTSTTSMPPSSVPAVVTSAMTTQPMHSGPAGIHSGPIQTAAPSNPQQQSQPQPHNIVAPHIPILMDPLVQSNYLISI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01288407;
90% Identity: iTF_00367442; iTF_00133583; iTF_01288407;
80% Identity: -