Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059996.1:23233577-23238548[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9.3e-06 0.00052 20.5 2.4 1 23 282 304 282 304 0.98

2 18 2.3e-05 0.0013 19.2 0.1 1 23 310 332 310 332 0.97

3 18 0.00018 0.01 16.4 0.3 1 23 338 360 338 360 0.98

4 18 0.00052 0.029 15.0 3.0 3 23 368 388 366 388 0.98

5 18 0.00018 0.01 16.4 7.9 1 23 394 416 394 416 0.99

6 18 1.2e-05 0.00067 20.1 4.2 1 23 422 444 422 444 0.98

7 18 3.1e-06 0.00017 22.0 4.3 1 23 450 472 450 472 0.98

8 18 7.9e-07 4.4e-05 23.8 4.9 1 23 478 500 478 500 0.97

9 18 8.5e-05 0.0047 17.4 6.7 1 23 506 528 506 528 0.97

10 18 0.00059 0.033 14.8 7.1 1 23 534 556 534 556 0.98

11 18 3.7e-06 0.0002 21.7 3.0 1 23 562 584 562 584 0.98

12 18 3.4e-05 0.0019 18.7 7.1 1 23 590 612 590 612 0.97

13 18 6.3e-06 0.00035 21.0 3.6 1 23 618 640 618 640 0.98

14 18 2.9e-05 0.0016 18.9 7.9 1 23 646 668 646 668 0.97

15 18 6.4e-06 0.00035 21.0 2.6 2 23 675 697 674 697 0.95

16 18 0.00017 0.0096 16.5 0.4 1 23 703 725 703 725 0.97

17 18 1.4e-05 0.00077 19.9 1.7 1 23 735 757 735 757 0.98

18 18 4.7e-05 0.0026 18.2 0.4 3 23 765 786 763 786 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9.3e-06	0.00052	20.5	2.4	1	23	282	304	282	304	0.98
2	18	2.3e-05	0.0013	19.2	0.1	1	23	310	332	310	332	0.97
3	18	0.00018	0.01	16.4	0.3	1	23	338	360	338	360	0.98
4	18	0.00052	0.029	15.0	3.0	3	23	368	388	366	388	0.98
5	18	0.00018	0.01	16.4	7.9	1	23	394	416	394	416	0.99
6	18	1.2e-05	0.00067	20.1	4.2	1	23	422	444	422	444	0.98
7	18	3.1e-06	0.00017	22.0	4.3	1	23	450	472	450	472	0.98
8	18	7.9e-07	4.4e-05	23.8	4.9	1	23	478	500	478	500	0.97
9	18	8.5e-05	0.0047	17.4	6.7	1	23	506	528	506	528	0.97
10	18	0.00059	0.033	14.8	7.1	1	23	534	556	534	556	0.98
11	18	3.7e-06	0.0002	21.7	3.0	1	23	562	584	562	584	0.98
12	18	3.4e-05	0.0019	18.7	7.1	1	23	590	612	590	612	0.97
13	18	6.3e-06	0.00035	21.0	3.6	1	23	618	640	618	640	0.98
14	18	2.9e-05	0.0016	18.9	7.9	1	23	646	668	646	668	0.97
15	18	6.4e-06	0.00035	21.0	2.6	2	23	675	697	674	697	0.95
16	18	0.00017	0.0096	16.5	0.4	1	23	703	725	703	725	0.97
17	18	1.4e-05	0.00077	19.9	1.7	1	23	735	757	735	757	0.98
18	18	4.7e-05	0.0026	18.2	0.4	3	23	765	786	763	786	0.97

Sequence Information

Coding Sequence: ATGACTTCGATTCCGACATTGGGTGGACATCATTTGGTGAATCAACAGCACAATAATATGCAAAACAGTAGTGGAGCTTCGTTATCGAATTCGCAACCGATGCAGGAACGTCATTCGCAAATTGTAAGCAATCAACAGTCTTCAGAGACGGTGAGCAATGCTCGCATGGACAACAATCCGAAAAAGCGAATGTTAtcacagcaacagcatcaaatGcAATCTCAGCCAATGCCGCATCATCAAGGGCATGCACAACTCTCACAACATGTGGCTCAACCGGGCTTACCAATTCCAATTCATCATCCAATCAGTcaattgtttgccattgatCCTCATGCTCAGCAAGCGATTAAAACTGAAAACGATAAATTTTATCACTTTCCATCCCATTCAATGGGCAAACCGCAAATATTGTCGGACACAAAACTTCCGCCGTcacaaatgtttgatgttCGAAATGCTGACGGCCAAATTGTTCAAGTGAATATTGAAGATATCAATCAGTTTTTAACGTATCACGAAGTGTTTGGGAAAATTGGTAATACGGATCATGCATTTCCGGCCACATCAAACACATTAACACCAATTCCACCAATCAATTCTTCCGTACCGGTGCCGAATACACAATCAGCACCGATGCCACCGACatcaatcaatcaaacaaatccaCCGGCCCAGTCAACGCCATTGATTATACCGAAAATTGAGAATATCAATACATCAGTATCGAATTCCAATTCGATATCAGTCAGTACTGCATCAAATGTTACAAATGCATCAACAGCAACATGTGCAACAACTGCCGCAACTGATGATCAAACGGCAATGCCATCACCAGGCATGCACACATGCGATATTTGTGGAAAAGTATTCGCATTTAAATACCAATTCATCGTGCATCGTCGCTATCATAATGAACGCAAGCCATTCATCTGCCAAGTTTGTGGACAGGCTTTCACAACATCCGTTGATTTAACATCACACGGTAAAATCCATGAAGGTGTCAAAATGTTCATATGCAAcgtttgtttcaatgtttttgcgAACGATGCTAGTCTTGAACGGCATATGAAAAGACACTCCACCGACAAACCATTTGGATGCACAGTTTGCCAGAAGACCTTTGGAAGAAAAGAGCACTTGGATAATCATTTCCGATCACACAGCGGAGAAACGCCATTTCGATGTCAATATTGTGCTAAGTGCTTTACACGACGTGAGCATATGCAGAATCATGTTCGAAAACATACCGGCGATACTCCGTTTAAGTGTGACATATGCAAGAAATCGTTCACGAGGAAGGAGCATTATGTAAACCATTACATGTGGCATACAGGTGAAACTCCGCACACATGTGGAGTGTGTGGAAAGAAATATACCAGAAAAGaaCATTTGGCCAACCATCAACGCTCCCATAcgaatgaaaatccatttcgatGTGAAATATGTGGAAAATGCTTCAGCCGCAAGGAACATTTTACCAACCATATCCTATGGCATACTGGAGAAACTCCGCACAGGTGTGACTTTTGTTCTAAGACATTCACGCGCAAAGAGCATCTATTGAATCATGTGAggcaacacacaaatgaatctCCACATCGATGCTCTTACTGTATGAAATCATTCACGAGACGTGAACACCTCATCAATCACACTCGACAACATACAGGGGAGACGCCGTTTAAATGCGAATTCTGCCCAAAAGCATTTGCACGAAAAGATCACCTTAACAACCATCGCAATCAGCACACAGGCCAATCTCTTCATAAATGCGTTTACTGTAGCAAAAGTTTCTCACGAAAAGAGCATCTGAAGAACCATCAAGTCAAGCATACCGGAATATCTCCGTATCAAtGTAAATTTTGTAACAAAATTTTCTCGCGACGAGAGCACTTGAATAATCATGAAATGATTCATACAGGTCAATCTCCTcataaatgtgtttattgtGACAAGGCATTCACACGCAAGGAGCACCTAAACAATCATTTGAAGCATCATTCCCCAGATAATCCGTTGATTTGCACTGTATgcaacaaatcattttcaagaaaaGAGTCGCTAGTCAACCACATGAGtcGATGCCATACAGGAGAGCGTCCATATGCATGTGAGACGTGTGGAAAATCATTTCCACTGAAAGGAAATTTGCTCTTCCATCAACGTAGCCATAATAAAGGAGTAAAAGCGGAGCGACCGTTCCGGTGTGATTTGTGCCCCAAAGATTTCATATCCAAAGGGCATTTGGTATCACATCGTCGATCCCACACCGGTGAAAAACCATTTGGATGCAGTCAGTGCGGCAAAGCATTTATTGGGAAGGGAAATCTTTTACGCCATGTCAAAAAGACACATCCAAATGTCACGGACATTCAAACCATCATGATGCAAGCAAAAGTGAAAGCAAAATCTGCAGCCAGTGCAACAATTGCAACGGTGAGTAATcagacaacagcaacaacatcaattcCACCATCATCAGTACCAGCTGTTGTCACATCAGCGATAACCACTCAACCAATGCACAGTGGTCCGGGTGCCATACATTCAGGACCCATACAAACTGCAGCTCCATCAAATCCACAGCAACAACCtcaaccaccaccaccaccgcaTAATATTGTTGCACCGCATATTCCAATCCTAATGGATCCTCTGGTTCAAAGCAACTACTTAATTAGCatctaa
Protein Sequence: MTSIPTLGGHHLVNQQHNNMQNSSGASLSNSQPMQERHSQIVSNQQSSETVSNARMDNNPKKRMLSQQQHQMQSQPMPHHQGHAQLSQHVAQPGLPIPIHHPISQLFAIDPHAQQAIKTENDKFYHFPSHSMGKPQILSDTKLPPSQMFDVRNADGQIVQVNIEDINQFLTYHEVFGKIGNTDHAFPATSNTLTPIPPINSSVPVPNTQSAPMPPTSINQTNPPAQSTPLIIPKIENINTSVSNSNSISVSTASNVTNASTATCATTAATDDQTAMPSPGMHTCDICGKVFAFKYQFIVHRRYHNERKPFICQVCGQAFTTSVDLTSHGKIHEGVKMFICNVCFNVFANDASLERHMKRHSTDKPFGCTVCQKTFGRKEHLDNHFRSHSGETPFRCQYCAKCFTRREHMQNHVRKHTGDTPFKCDICKKSFTRKEHYVNHYMWHTGETPHTCGVCGKKYTRKEHLANHQRSHTNENPFRCEICGKCFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTNESPHRCSYCMKSFTRREHLINHTRQHTGETPFKCEFCPKAFARKDHLNNHRNQHTGQSLHKCVYCSKSFSRKEHLKNHQVKHTGISPYQCKFCNKIFSRREHLNNHEMIHTGQSPHKCVYCDKAFTRKEHLNNHLKHHSPDNPLICTVCNKSFSRKESLVNHMSRCHTGERPYACETCGKSFPLKGNLLFHQRSHNKGVKAERPFRCDLCPKDFISKGHLVSHRRSHTGEKPFGCSQCGKAFIGKGNLLRHVKKTHPNVTDIQTIMMQAKVKAKSAASATIATVSNQTTATTSIPPSSVPAVVTSAITTQPMHSGPGAIHSGPIQTAAPSNPQQQPQPPPPPHNIVAPHIPILMDPLVQSNYLISI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01288407;
90% Identity: iTF_01350969;
80% Identity: -