Smos010498.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- sip1
- Assembly
- GCA_009176505.1
- Location
- VUAH01000002.1:696751-699678[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-82 5.7e-78 262.4 9.3 2 275 395 659 394 659 0.97 2 2 0.0068 66 3.1 0.3 243 270 672 699 661 704 0.83
Sequence Information
- Coding Sequence
- ATGTCTGACACAGAGTATGAGAAATTTGAGATAAACGATTATGATTTGGAGAATGAGTTTAATCCATTTCGAACCGGTCGAAAGCGACcgacgaaaaatcaacaaatttatGGCATTTGGGCTGATGATGATAGCGATGATGAGGGCAGTCAAAGCACATCAAAAGGTCGAAATCGTGGCGATACACGAAGAGGAAAAGATTATACGGCGCCCATCGGTTTTGTTGCCGGCGGAATTCAACAGTCGGGAAAGAAAAAGGAGGAAGAAACCAAGAAATCAGATGAAGAAAAAGCAGATGGAGCAGACGGTAGTAACACATCAAGTGAATCCGATGGTGAAGCAAGACCAACAATGTCATTTAGAGGCAAAGGTGGTAAGGGAGGCAAGCAAAATCAAGCGGGTTTCCAGTTCACGTCAAACTCAATGCCAAATAGAGGCTTGGGCAATTGGGAGCAACACACGCGTGGTATTGGAGCCAAATTGCTGCTTCAAATGGGTTATGAGCCTGGCAAAGGTTTAGGAAAAGATTTACAAGGTATATCACAGCCAGTGCAAGCACATTTGCGTAAAGGACGCGGAGCAATCGGTGCGTATGGCACTGAACACGGTCAAACGATCGGTGAtgccaaatcaaataaacCCAAAGTGGATGaggatgaaaaagaagaaaaagatttcaaagaaaaaatggagcAGTGGCGTAAAGGACCAACTGattcaaagtcgaaaaagaaaCGCTACTACAAAAGTGTGGAGGATATTATtgagaaagggaaaaaaaagaattacataCTTTCGGATAAGTTGAGCACAAAAATGAGCAATGTAACCGTCATCGATATGACTGGGCCAGAAAAGCGTATATTAAGCGGCTATCATGCGCTGGGTCAAGCAAAAATGAGTGAAGAAAATCTGTACAAACAGCGGCCAGCAAAGGAGTGTGTCAACTTTGACTTGCCCGAACTAACCCATAATCTCGATCTCATTTTGGATATGTGTGAGCAggaaatcattcaaattgataaaaataagaaGGCAGCAGCTGATCGTAAGGTGGCATTGCGCCAAGACAAGGAAAGTTTGGAGAAAATTGTTAAATTGGAACAGGATCACATTGCAACGCTGAAGAATGTGACGGAGTTAGTTGAGTCATTGGCATCGCCCAAAGAACCGTTAACATTGAGTAAATCGGCGGAAATATTCACACAACTTCTCAACGAATATCCAGATGATTACAAAGAGTTTGGCTTATCGGATTTGGTGCCCGGTGTGATTGCACCTCTGTTTCAACGAGAATTGCGTGATTGGGATGTTTTGGATGCGCCTGAATATCCAGTGAAACTTCTTAAACGCTTTGAATTCCTTAACGACGATAAAAGccaaaataacaatattttcagTCCTTATTCATCGCTGATTATGTTTGGCATCATTCCGAATATTCGGACAGCAATAGCCGAATGGAACCCACGAAATCACCAAGCCATGGCTGATCTACTCGATACTTGGGCCAAACTTTTCCCAGCCCATATACTTGATAATGTCCTCGAAAAGCAAATTCTGCCGCGAATCGTCAAGGGCGTTGAAGTATGGGATCCAACGACAGATACACTTCCAGTTCACTTTTGGGTTATTCCATGGCACAATTTGCTCGGAACGAAGATGAAAGAAAACGTTTATCCGATGATTATGGAAAAATTGAGCAAAGCACTTGTTTCATGGTTACCATCCGACCGATCGGCCAGAGCTATCATCGCACCGTGGAAAGGCGTTTTCCCAGAAACAGACTTCCAAAACTTCCTGCTCAAGAATATTATTCCGAAGTTGCAGCTTACTTTGGCGGAGATAATAATCAATCCACACCATCAAGACATGgatcaattcaattcagtttGGGAATGGCATGAGTTGATATCTACACAAGCAATGGCACAGATGCTTGGGAAATACTTCTTCCCGAAATGGATGCAGACGCTTGTCATTTGGCTCAATCAGAATCCGAATCTGGAGCAAGTTAGTAGATGGTTTTTAGGGTGgaaatcacaattttcaacCGCCATTTTGGAGTCAATCACTATCAAAGAACACTTCCGTCGAGCTCTTGAGTTGATGCAACGTTCGACTGGTGCTGGTCTACCGGCAAATATGCAGATGCCAACGCCAATCATTGAACCGATCGTGAGTGCGCCTCCACCACCGTCGCTAATGGATTTCAATGTTGGACCCGCACCACAGCTCGAATTCAAAGAACTCGTTTCACAGAAATGTGCCGAACGAGGAATCATCTTTGCTCCGATGCCAGGCCGCAGAGAACACGGCAAACAAGTCTATCGAGTTGGCAAACTGTTTTGTTACATTGATCGAACAGTCGTTATGTTGAGTGACGGTAGTTTTACCAATTGGATACCTGTTTCAATACCATCACTACTTGACCGAGCCGTTACCGGAGcattttaa
- Protein Sequence
- MSDTEYEKFEINDYDLENEFNPFRTGRKRPTKNQQIYGIWADDDSDDEGSQSTSKGRNRGDTRRGKDYTAPIGFVAGGIQQSGKKKEEETKKSDEEKADGADGSNTSSESDGEARPTMSFRGKGGKGGKQNQAGFQFTSNSMPNRGLGNWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHLRKGRGAIGAYGTEHGQTIGDAKSNKPKVDEDEKEEKDFKEKMEQWRKGPTDSKSKKKRYYKSVEDIIEKGKKKNYILSDKLSTKMSNVTVIDMTGPEKRILSGYHALGQAKMSEENLYKQRPAKECVNFDLPELTHNLDLILDMCEQEIIQIDKNKKAAADRKVALRQDKESLEKIVKLEQDHIATLKNVTELVESLASPKEPLTLSKSAEIFTQLLNEYPDDYKEFGLSDLVPGVIAPLFQRELRDWDVLDAPEYPVKLLKRFEFLNDDKSQNNNIFSPYSSLIMFGIIPNIRTAIAEWNPRNHQAMADLLDTWAKLFPAHILDNVLEKQILPRIVKGVEVWDPTTDTLPVHFWVIPWHNLLGTKMKENVYPMIMEKLSKALVSWLPSDRSARAIIAPWKGVFPETDFQNFLLKNIIPKLQLTLAEIIINPHHQDMDQFNSVWEWHELISTQAMAQMLGKYFFPKWMQTLVIWLNQNPNLEQVSRWFLGWKSQFSTAILESITIKEHFRRALELMQRSTGAGLPANMQMPTPIIEPIVSAPPPPSLMDFNVGPAPQLEFKELVSQKCAERGIIFAPMPGRREHGKQVYRVGKLFCYIDRTVVMLSDGSFTNWIPVSIPSLLDRAVTGAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288129; iTF_00367213; iTF_00133239;
- 90% Identity
- -
- 80% Identity
- -