Cnas010907.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- sip1_1
- Assembly
- GCA_009176525.2
- Location
- NW:185475-188390[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-80 5.9e-76 255.3 8.7 2 275 390 653 389 653 0.96 2 2 0.31 2.1e+03 -2.4 0.0 246 268 669 691 658 706 0.52
Sequence Information
- Coding Sequence
- atgtcTGACACCGAATATGAAAAGTTTGAGATAAACGATTACgatttggaaaatgaattcaatccaAATCGAATGGGTCGAAGGCGACcgacaaaaaatcaacaaatttatgGAATTTGGGCTGATGATGACAGTGATGATGATGCTGGACAAAGCACATCTAAAGGTCGAAACCGGACCAATGTACGCAAAGCAAAAGATTATGCGGCGCCCATTGGTTTTGTTGCCGGTGGCGTTCAACAATCGggaaagaaaaaagacgaagaaacCATGAAATCAGATGAAGAGAAATCAAATGATGATAAGGGCGGCAATACATCAAGCGAATCGGAGAGTGAAGCAAGACCACAAATATCGTTTGGTGGCGGcaagaaaaatcaatcgagttttcaattcacatcTAATTCAATATCGAATCGTGGTTTGGGCGGATGGGAGCAGCATACTCGTGGTATTGGGGCCAAACTTTTACTTCAAATGGGTTACGAGCCGGGAAGAGGTTTAGGCAAAGATTTACAAGGTATTTCACAACCCGTACAAGCTCATGTGCGAAAAGGACGTGGTGCTATTGGTGCTTATGGCACCGAACAACCTGGTCAAACGATTGGCgatgcaaaatcaaataagCCAAAAATTGACGACGATGAAAGAGAGGCCAAAGAGTTTAAAGAGAAAATGGACCAATGGCGAAAAGATACAAACGACTCAAAATCGAAGAAGAAGCGAAACTATAAAAGTGTCGAAGATATTATTGAGAAAGGAAAGAAACCAACTTATATACTTTCAGATAAGTTGAGTTCAAAGATGAACACCGTTGTGATTGATATGACTGGTCCTGAAAAGCGTGTATTAAGTGGTTATCATGCACTAGGTCAAACTAAAGTAGCCGATGAAAACCTGTATAAGGAACGCACGGTTAAGGAATGTACCAATTTTAGTTTGCCAGAACTGACACACAATTTGGATCTGATACTGGACTTGTGCGAACAGgaaatcattcaaatcgataaaaatcaaaagacaGCTTCCGATCGAAAAGTTGTGTTGCGTCAAGATAGAGACAGTTTGgagaaaattgttaaattagAACAGGATCATATTGAAACGATTGAGCATGTGTTGGAATTGGTTGAATCATTGACATCACCAAAGCAGCCGTTAACATTGAGCGAATCAGCAGAGATTTTCATGGGCATACTCAATGATTATCCTGACGAATACATAGAGTTTGGACTTTCGGATTTGGTTCCCGGTGTGATTGCACCATTATTTCAACAAGAATTACGTGAATGGGATGTTTTTGAAATGCCCGCTTATCCAGTGAAGCTTATCCAAcgctttgaatttttaaatgataataaaagtgaaaataacattttcagtCCATATTCGTCGTTGATTTGGTTTGGCATTATTCCAAATATTCGCACAGCCATCAACGAATGGAATCCAAGAAATCATGAACCAATGGCCAATTTGCTTGATATTTGGGCAAAATTATTTCCAGCCCATATACTTGATAATGTtcttgaaaaacaaattctacCGCGAATTGTAAAGGGTGTTGAACTATGGGATCCGACTACGGATACTCTTCCGGTCCATTTTTGGGTCACACCTTGGCACACGTTACTCGGCGCAAGTATGAAGGAAACTGTTTATCCAGTGATTATGGAAAAATTGAGCAAAGCACTTGTTTCATGGTCACCATCAGATGGGTCAGCACGGAACATAATTTCACCTTGGAGCGGCATTTTTCCAGATTCAGACTTTCaaaattttttacaaaaaaatattgttccGAAATTGCAGTTAGTTTTATCCGAATTAATCATCAATCCACTTCATCAAGATATGCATCAATTCAAATGCGTATGGGAATGGCATGAATTAATATCAACATCGGCAATGTCACAGATGCTTTCCAAGTATTTTTTCCCAAAATGGATGCAAACCCTTGTCATTTGGCTCAATCAGAATCCAAACTTCGAGCAAGTTTCACGATGGTATTCGGGATGGAAATCACAATTTTCCGATGAGATTctacaacaaaatacaataaaagagCATTTCCGTCGTGCTCTCGATTTAATGCAACGTTCAACCGGCGCTATTCTACCGTCAAATATGCAAATTCCAACACCGATTATCGAACCAATTGTGAATGTACCACCGCCACCATCACTTATGGATTTACATATTGCACCAGCACCACAACTCGAATTCAAAGAACTGGTTTCACAAAAATGCGCAGAACGTGGAATCATTTTTGCACCGATGCCGGGTCGACGGGAACATGGCAAACAGGTCTATCGTGTTGGCAAACTATTTTGCTACATCGATCGCACTGTTGTGATGTTGAGTGACGGTAGTTTCGTTAATTGGATACCAGTTTCAATAAATTCGCTACTTGACCGAGCCATTACCGGagcattttaa
- Protein Sequence
- MSDTEYEKFEINDYDLENEFNPNRMGRRRPTKNQQIYGIWADDDSDDDAGQSTSKGRNRTNVRKAKDYAAPIGFVAGGVQQSGKKKDEETMKSDEEKSNDDKGGNTSSESESEARPQISFGGGKKNQSSFQFTSNSISNRGLGGWEQHTRGIGAKLLLQMGYEPGRGLGKDLQGISQPVQAHVRKGRGAIGAYGTEQPGQTIGDAKSNKPKIDDDEREAKEFKEKMDQWRKDTNDSKSKKKRNYKSVEDIIEKGKKPTYILSDKLSSKMNTVVIDMTGPEKRVLSGYHALGQTKVADENLYKERTVKECTNFSLPELTHNLDLILDLCEQEIIQIDKNQKTASDRKVVLRQDRDSLEKIVKLEQDHIETIEHVLELVESLTSPKQPLTLSESAEIFMGILNDYPDEYIEFGLSDLVPGVIAPLFQQELREWDVFEMPAYPVKLIQRFEFLNDNKSENNIFSPYSSLIWFGIIPNIRTAINEWNPRNHEPMANLLDIWAKLFPAHILDNVLEKQILPRIVKGVELWDPTTDTLPVHFWVTPWHTLLGASMKETVYPVIMEKLSKALVSWSPSDGSARNIISPWSGIFPDSDFQNFLQKNIVPKLQLVLSELIINPLHQDMHQFKCVWEWHELISTSAMSQMLSKYFFPKWMQTLVIWLNQNPNFEQVSRWYSGWKSQFSDEILQQNTIKEHFRRALDLMQRSTGAILPSNMQIPTPIIEPIVNVPPPPSLMDLHIAPAPQLEFKELVSQKCAERGIIFAPMPGRREHGKQVYRVGKLFCYIDRTVVMLSDGSFVNWIPVSINSLLDRAITGAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350693;
- 90% Identity
- -
- 80% Identity
- -