Smos001738.1
Basic Information
- Insect
- Sitodiplosis mosellana
- Gene Symbol
- -
- Assembly
- GCA_009176505.1
- Location
- VUAH01000011.1:1876203-1887543[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-12 7.4e-09 35.3 0.0 1 39 313 352 313 356 0.90 2 4 3.6e-13 3.9e-10 39.4 0.1 2 39 368 405 367 408 0.94 3 4 1.8e-17 1.9e-14 53.2 0.0 1 45 422 467 422 467 0.97 4 4 4.5e-17 4.8e-14 51.9 0.0 1 40 474 514 474 516 0.96
Sequence Information
- Coding Sequence
- atggttGGTGTTCCAATGGGATTTTTAGATTTTGCTCCAGAACCACCTGCACCGCAAGCAACCAAAGTAACGGAAAGCGTTAATCTCAATCCTACGACGAATAACGATGCCAGAGACTTGTCAAACTTAACGCCAAATGGTGATGTacgaattaaatttgaaacgCTCCGTTCACTTGATCCCGACACTTTAGAAATTGATAATCGTGCGGCGCCAGTGCAATATTCGATGCAGCAACTTGAGCATTATCAACAGATTACACCACAATATGCGCATCatccgccgccgccgccaccgaCACAGCAACAAATTCCAAATCATCAGGcgtacacacaacacattcAACATCATATACCCCATTCACAGGCTCAATTAATCAATGTGAACACGATTAAAATTGAGCCGGGTGTTGTGATTAAGCAAGAGCCCGAGTTGAATATAAAAGAGGAACCACGTTCGCCGCATAGCAACCTCTCGAATCAAGCACAGAATCAGATTCACAGCCAACAAATGCCTTCACAACCATCGACCCCAcatcagcaacagcaacaacaacaacagcagcaacaacaacaacaacaacagtctCAACCGAACAATGCGGCACCGATGCAAATCGATCATTTCCAGCAGATTCAAGCTCAGTCTCACAACAATCATCATCAAGTGCAAGTCCAACAAATTCACAACCAGCAAATGCCTTCACAGCCGTCGACACCGCATCAACCGTCGCAACCGAATATTGAGGTCGATCTAAGCATCGTGAAGCAAGAGCGACCGAAGAAAAAGTccaaatccaaacaaaataaaaatcatcaaatggACACTAGCGAAGATACTAATATGAATGAATCATCGTCCGATCGCTCATCGCCACAATACACCAATTTGACATCACAGAATGAAAAGAGCTCACAAAACAGTCCAAAAACTTGGACACAAGAAGATATGGATTCGGCATTAGAAGCCCTTCGTAGCCATAATATGAGCTTAACTAAAGCATCCATGACATATGGCATTCCATCGACCACACTTTGGCAACGTGCTCATCGTCTCGGCATTGATACGCCGAAAAAAGATGGCCCAACTAAATCGTGGAACGAAGACTCACTCAACAGTGCTTTGAATGCTCTGCGCACTGGTCAAATTTCGGCAAATAAAGCGTCCAAAGCTTATGGCATTCCATCATCGACTCTCTACAAAATTGCCCGGCGTGAAGGTATCCGCTTGGCCGCTCCGTTCAATGCCGCACCAACGACATGGTCGCCCGAAGACTTGGAACGTGCACTTGAAGCAATCCGCGGTGGACACACCTCAGTGCAAAAGGCAAGCGCTGAATTTGGCATTCCAACCGGTACATTGTACGGTCGTTGCAAACGCGAAGGCATTGAATTGTCGCGTTCGAATCCAACACCATGGTCGGAGGATATAATGTTGGAAGCATTGGAATCGGTTCGTTTGGGTCAAATGTCCGTAAATCAAGCAGCTATTCATTACAATTTGCCGTACAGTTCACTATACGGCCGCTTCAAGCGTGGCAAATTCGATCCAAATGGTTCGAGTGACACTTTGAATACGTCACAAAacgaacagcagcagcagcaacaacaacaacagcaacagcagcagcaaaaccAGCAAGCTCAAGTCAATCAGCAGTCGCATAGCCAACAGACAATTCAGACTCACCAATCGGTTCCTGTTACCCAAACTACTCAAGCACATCATATTACTACGCAGTCACATCAACCCCAAGTGACTCAAgtacaacaacaccaacagcCACAAACCATTCAGCTCGATCATACACAACAACATCATGTCATCCAATTACACCAACACCAACAGAAGTATCAGCCTCCTCCGCAGCCGATCGCAATCAATACGTTCCAATACAATCCTGGTCCAAGCACAAATCAAGCGCTTCAGCTGAATCCGCATCTTCatcaaattcaacatttgCCTCATATGCTGACATCGCAGTCGCCGTTGCTTAATTTGAACTTGCATCCACAACAAATCCAGATCCATCACATTCAACATCCATTGAGTCGTCAACAAATGTAA
- Protein Sequence
- MVGVPMGFLDFAPEPPAPQATKVTESVNLNPTTNNDARDLSNLTPNGDVRIKFETLRSLDPDTLEIDNRAAPVQYSMQQLEHYQQITPQYAHHPPPPPPTQQQIPNHQAYTQHIQHHIPHSQAQLINVNTIKIEPGVVIKQEPELNIKEEPRSPHSNLSNQAQNQIHSQQMPSQPSTPHQQQQQQQQQQQQQQQQSQPNNAAPMQIDHFQQIQAQSHNNHHQVQVQQIHNQQMPSQPSTPHQPSQPNIEVDLSIVKQERPKKKSKSKQNKNHQMDTSEDTNMNESSSDRSSPQYTNLTSQNEKSSQNSPKTWTQEDMDSALEALRSHNMSLTKASMTYGIPSTTLWQRAHRLGIDTPKKDGPTKSWNEDSLNSALNALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALEAIRGGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDIMLEALESVRLGQMSVNQAAIHYNLPYSSLYGRFKRGKFDPNGSSDTLNTSQNEQQQQQQQQQQQQQQNQQAQVNQQSHSQQTIQTHQSVPVTQTTQAHHITTQSHQPQVTQVQQHQQPQTIQLDHTQQHHVIQLHQHQQKYQPPPQPIAINTFQYNPGPSTNQALQLNPHLHQIQHLPHMLTSQSPLLNLNLHPQQIQIHHIQHPLSRQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133163; iTF_00367148;
- 90% Identity
- -
- 80% Identity
- -