Aaph003938.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:43194289-43198140[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-12 7.2e-09 35.4 0.0 1 39 331 370 331 374 0.90 2 4 2.3e-13 3.8e-10 39.4 0.1 2 39 386 423 385 426 0.94 3 4 1.2e-17 1.9e-14 53.2 0.0 1 45 440 485 440 485 0.97 4 4 1.8e-17 3e-14 52.6 0.0 1 41 492 533 492 536 0.94
Sequence Information
- Coding Sequence
- atggttgGTGTTCCAATGGGATTTTTAGATTTTGCTCCAGAACCACCTGCACCGACAGCAACACCAGTCAAAGTAACGGAAAGCGTTAATCTCAATTGTACGTCGAATAACGATGCAAGAGACTTGTCAAACTTAACGCCAAATGGTGATGTacgaattaaatttgaaacgCTCCGTTCACTTGATCCCGAAACTTTAGAAATTGATAATCGTGCGGCGCCAGTGCAATATTCGATGCAGCAACTCGACCATTATCAGCAAATCAGCTCACAATATGCGCATCATGCGACacagcaacaaattcaaaatcatcaagGGTATACGCAGCACATTCAACATCATGTACCACATTCGCAGGCTCAATTAATCAATACCATAAAAATTGAGCCGGGCGTTGTGATTAAACAGGAGCCTGAACTGAATATTAAAGAGGAGCCACATTCGCCGCATAATAATTTAACGAATCAAGCACAGAATCAGCAAATTCACAGCCAACAAATGCCTTCACAACCATCGACTCCACATCAACAGTCACAATCGAACAATGCGACACCGATGCAAATTGATCATTTCCAGCAGATTTCTGGTCAGCCACACAACAATCATCATCAAGTTCAGCAAGTCCAACAAATCCATAACCAACAAATGCCTTCACAGCCGTCGACgccacagcaacaacaacagcagcagcagcaacagcaacaacagcagcagcaacaacagcaacaacaacagcagcagcagcagcagcaacagcaacaacagcaagcGCCGGCATCGTCACAGCCACCCAACAATGAGGTCGATCTGAGCATTGTCAAGCAAGAGACTCGACCAAAGAAAAAGTCCAAATCCAAGcagaacaaaaatcaaatggATACTAGCGAAGACACTGTAATGAATGAATCATCATCGGATCGTTCATCGCCACAATACACCAATTTaacatcacaaaatgaaaagagctCACAAAATAGTCCGAAAACATGGACACAAGAAGATATGGACTCAGCACTGGAAGCCCTACGCAGCCATAATATGAGCTTAACAAAGGCATCCATGACATATGGCATTCCATCGACCACGCTATGGCAACGTGCACATCGTTTGGGTATTGATACACCGAAAAAAGATGGTCCAACCAAATCGTGGAATGAAGATTCACTCAACAGTGCGTTGAATGCGTTACGCACTGGCCAAATTTCGGCAAACAAAGCGTCCAAAGCTTATGGCATTCCATCATCGACTCTCTATAAAATTGCACGGCGCGAAGGCATTCGTTTGGCAGCACCGTTCAATGCAGCCCCAACAACATGGTCACCCGAAGACTTGGAGCGCGCTCTGGAAGCGATCCGTGGCGGTCATACATCCGTGCAAAAAGCGAGCGCCGAATTTGGCATTCCAACTGGTACATTGTATGGCCGTTGCAAACGCGAAGGTATTGAATTGTCACGCTCGAATCCAACGCCGTGGTCCGAAGATATCATGTTGGAGGCATTGGAATCGGTGCGCTTGGGACAAATGTCTGTCAATCAAGCAGCTATCCACTACAATCTACCGTATAGCTCGCTATACGGTCGTTTCAAGCGTGGCAAATTCGATACAAATGGCTCGTCggacacattgaattcatcgCAAAGtgagcaacagcaacaagcaCAGCCGAATCAACAGGCTCAAGTCAATCAGCAACAGCATACACAGCAAACTATTCAGACACACCAATCGGTTCCTGTTACCCAAACTACTCAAGCACATCATATTACTACGCAGTCACATCAACCCCAACCGTATCAGCCTCCACAACCGATTGCAATCAATACGTTCCAATATAATCCGGGTCCAAGCACAATTCAAGCGCTTCAACAAAATCCACATCTTCATCAGATTCAGCATTTGCCGCATATGCTAACATCTCAATCACCGTTGCTAAATTTAAACTTACATCCACAGCAAATTCAGATCCATCACATTCAACATCCGTTGAGCCGTCAACAAATGTAA
- Protein Sequence
- MVGVPMGFLDFAPEPPAPTATPVKVTESVNLNCTSNNDARDLSNLTPNGDVRIKFETLRSLDPETLEIDNRAAPVQYSMQQLDHYQQISSQYAHHATQQQIQNHQGYTQHIQHHVPHSQAQLINTIKIEPGVVIKQEPELNIKEEPHSPHNNLTNQAQNQQIHSQQMPSQPSTPHQQSQSNNATPMQIDHFQQISGQPHNNHHQVQQVQQIHNQQMPSQPSTPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAPASSQPPNNEVDLSIVKQETRPKKKSKSKQNKNQMDTSEDTVMNESSSDRSSPQYTNLTSQNEKSSQNSPKTWTQEDMDSALEALRSHNMSLTKASMTYGIPSTTLWQRAHRLGIDTPKKDGPTKSWNEDSLNSALNALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALEAIRGGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDIMLEALESVRLGQMSVNQAAIHYNLPYSSLYGRFKRGKFDTNGSSDTLNSSQSEQQQQAQPNQQAQVNQQQHTQQTIQTHQSVPVTQTTQAHHITTQSHQPQPYQPPQPIAINTFQYNPGPSTIQALQQNPHLHQIQHLPHMLTSQSPLLNLNLHPQQIQIHHIQHPLSRQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350609;
- 90% Identity
- -
- 80% Identity
- -