Cnas008192.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:4605340-4615580[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5e-12 5.4e-09 35.3 0.0 1 39 332 371 332 375 0.90 2 4 1.9e-13 2.8e-10 39.4 0.1 2 39 387 424 386 427 0.94 3 4 9.3e-18 1.4e-14 53.1 0.0 1 45 441 486 441 486 0.97 4 4 1.4e-17 2.2e-14 52.5 0.0 1 41 493 534 493 537 0.94
Sequence Information
- Coding Sequence
- atggttGGTGTTCCAATGGGATTTTTAGATTTTGCTCCAGAACCACCTGCACCGACAGCAACACCAGTCAAAGTAACGGAAAGCGTTAATCTTAATTGTACGTCGACTAGCGATGCCAGAGACTTGTCAAACTTAACGCCAAATGGTGATGttcgaattaaatttgaaacgCTCCGTTCACTTGATCCCGAAACTTTAGAAATTGATAATCGTGCGGCGCCAGTGCAATATTCGATGCAGCAACTCGAGCATTATCAACAGATTACACAACAATATGCGCACCATCCGCCGCCGCCATCGtctcaacaacaacaacaacaacaacaacagcagcagcagcagcagcagcagcagcagcagcagcaacaacaacaacaacagcagcagcaacagcagcaaattcaaaatcatcagGCTTACGCGCAACATATTCAACATCATATATCCCATCCACAAGCtcaattaatcaaaattgaGCCAGGCGTTGTGGTAAAACAGGAGCCCGAGCTAAATATCAAAGAAGAGCCACATTCGCCGCATAACAATCTCAATTCGAATCAAGCACAGAATCAGATTCACAGCCAGCAAATGCCTTCACAACCGTCGACGccacatcaacaacaacaacaacagtccCAAGCGAACAATGCGACACCGATGCAAATCGATCATTTCCAACAAATTTCCGCTCAATCCCATAACAATCATCATCCAGTGCAAGTCCAACAAATTCACAACCAGCAAATGCCTTCACAGCCATCGACACCGCATCAGCCACAGTCGCAAGGTACTCACGAGATCGACTTAAGTATCGTGAAGCAAGAGACACGACCGAAGAAAAGCAAGAAATCCAAGCAAGcgaaaaatcatcaaatggATACTAGCGAGGACGCTGTCAATATGAATGAATCATCGTCAGACCGTTCATCGCCACAATACACTAATTTGacatcacaaaatgaaaagagctCACAAAATAGTCCAAAAACTTGGACACAAGAAGATATGGATTCGGCATTAGAAGCCCTGCGCAGCCATAATATGAGCTTAACAAAGGCATCCATGACATATGGCATTCCATCGACCACACTTTGGCAACGTGCTCATCGTCTTGGCATTGATACACCGAAAAAAGATGGCCCAACCAAATCGTGGAACGAAGACTCACTGAATAGTGCATTGAACGCTCTGCGCACCGGCCAAATATCGGCAAATAAAGCATCGAAAGCATACGGCATTCCATCTTCGACTCTCTATAAAATTGCCCGTCGTGAGGGCATTCGTTTGGCAGCACCATTCAATGCAGCGCCAACAACATGGTCACCAGAAGATTTAGAACGTGCACTGGAGGCAATTCGTGGTGGCCACACATCGGTGCAAAAAGCAAGCGCTGAATTTGGCATTCCAACTGGTACATTGTACGGTCGTTGTAAACGTGAAGGCATTGAATTGTCACGTTCAAATCCAACACCATGGTCAGAGGATATTATGCTGGAAGCATTGGAATCGGTTCGTTTGGGTCAAATGTCTGTCAATCAGGCAGCTATTCATTACAATTTGCCGTATAGTTCATTATATGGACGCTTCAAACGCGGTAAATTCGACACAAATGGTTCGACTGATGCATTGAATACGTCACAAAAtgagcaacagcaacaacagcagtcAAATCAACAGGCTCAAGTTaatcaacagcagcagcagcaacaacaacaacatacacaACAGACAATTCAGAATCACCAATCGGTTCCTGTTACCCAAACTACTCAAGCACATCATATTACTACACAGCCACATCAAGCGCAAGTGTCACAGgtgcaacaacatcaacagccGCAAACTATTCAGCTTGATCACACACAACAACACCATGTCATCCAATTACACCAACATCAACAAAAGTATCAGCCACCTCCACAGCCGATCGCTATCAATACGTTCCAATACAATCCGGGTCCAAGCACAAATCAGCTTCAGCTGAATCCGCATCTACAACAAATTCATCATTTGCCTCATATGTTGACATCGCAATCGCCGTTGCTTAATTTGAACTTGCATCCGCAACAAATCCAAATTCATCACATTCAACATCCGTTGAGCCGTCAGCAAATGTAA
- Protein Sequence
- MVGVPMGFLDFAPEPPAPTATPVKVTESVNLNCTSTSDARDLSNLTPNGDVRIKFETLRSLDPETLEIDNRAAPVQYSMQQLEHYQQITQQYAHHPPPPSSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQIQNHQAYAQHIQHHISHPQAQLIKIEPGVVVKQEPELNIKEEPHSPHNNLNSNQAQNQIHSQQMPSQPSTPHQQQQQQSQANNATPMQIDHFQQISAQSHNNHHPVQVQQIHNQQMPSQPSTPHQPQSQGTHEIDLSIVKQETRPKKSKKSKQAKNHQMDTSEDAVNMNESSSDRSSPQYTNLTSQNEKSSQNSPKTWTQEDMDSALEALRSHNMSLTKASMTYGIPSTTLWQRAHRLGIDTPKKDGPTKSWNEDSLNSALNALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALEAIRGGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDIMLEALESVRLGQMSVNQAAIHYNLPYSSLYGRFKRGKFDTNGSTDALNTSQNEQQQQQQSNQQAQVNQQQQQQQQQHTQQTIQNHQSVPVTQTTQAHHITTQPHQAQVSQVQQHQQPQTIQLDHTQQHHVIQLHQHQQKYQPPPQPIAINTFQYNPGPSTNQLQLNPHLQQIHHLPHMLTSQSPLLNLNLHPQQIQIHHIQHPLSRQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350609;
- 90% Identity
- -
- 80% Identity
- -