Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292276.1:29257080-29260908[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.024 55 4.2 0.0 22 53 146 177 142 178 0.84

2 16 0.0044 10 6.6 0.1 23 52 202 231 190 238 0.83

3 16 0.095 2.2e+02 2.3 0.0 21 52 256 287 249 289 0.86

4 16 0.39 8.9e+02 0.3 0.0 23 44 286 307 282 312 0.87

5 16 0.015 35 4.8 0.3 24 52 314 342 310 344 0.81

6 16 0.27 6.2e+02 0.8 0.0 22 53 368 399 363 400 0.85

7 16 0.26 5.9e+02 0.9 0.0 23 44 397 418 393 424 0.88

8 16 0.015 33 4.9 0.4 23 52 424 453 420 455 0.82

9 16 0.0083 19 5.7 0.0 22 52 479 509 473 511 0.84

10 16 0.024 55 4.2 0.0 21 44 506 529 503 533 0.89

11 16 0.0036 8.2 6.8 0.4 22 52 534 564 531 566 0.82

12 16 0.00054 1.2 9.5 0.0 22 53 590 621 586 622 0.87

13 16 0.01 24 5.4 0.2 22 52 645 675 634 677 0.83

14 16 0.077 1.8e+02 2.6 0.0 21 52 672 703 667 705 0.85

15 16 8.7e-05 0.2 12.0 0.1 22 52 701 731 695 733 0.89

16 16 0.17 3.8e+02 1.5 0.0 23 46 730 752 727 760 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.024	55	4.2	0.0	22	53	146	177	142	178	0.84
2	16	0.0044	10	6.6	0.1	23	52	202	231	190	238	0.83
3	16	0.095	2.2e+02	2.3	0.0	21	52	256	287	249	289	0.86
4	16	0.39	8.9e+02	0.3	0.0	23	44	286	307	282	312	0.87
5	16	0.015	35	4.8	0.3	24	52	314	342	310	344	0.81
6	16	0.27	6.2e+02	0.8	0.0	22	53	368	399	363	400	0.85
7	16	0.26	5.9e+02	0.9	0.0	23	44	397	418	393	424	0.88
8	16	0.015	33	4.9	0.4	23	52	424	453	420	455	0.82
9	16	0.0083	19	5.7	0.0	22	52	479	509	473	511	0.84
10	16	0.024	55	4.2	0.0	21	44	506	529	503	533	0.89
11	16	0.0036	8.2	6.8	0.4	22	52	534	564	531	566	0.82
12	16	0.00054	1.2	9.5	0.0	22	53	590	621	586	622	0.87
13	16	0.01	24	5.4	0.2	22	52	645	675	634	677	0.83
14	16	0.077	1.8e+02	2.6	0.0	21	52	672	703	667	705	0.85
15	16	8.7e-05	0.2	12.0	0.1	22	52	701	731	695	733	0.89
16	16	0.17	3.8e+02	1.5	0.0	23	46	730	752	727	760	0.82

Sequence Information

Coding Sequence: ATGTGTGCTGCCAAAGTTTATGCATATTACTTGTTTAAAACAAACTACGATGATAGAGGAAAATCAATGGAAACCGTAACCAATAGATCCTGGATGCCATCTGTAGATCCACTTTTAATTCCGATAAATAGTCCTAAATCAGAAGATAATTGGGAAAACACCCAAAATCAAAGTGTTGAAGTAAATTCGggtgaaaatcaaatttgtacGAAATGGAATACAAAAGAATTATGTGAGGAGAGAAATGATATAAATTTAGTACAGAAAGTGTCTCCACAATCTTCGGATGAGACCAATTGTTTAATCAAATCAGAAATTGATATTTCCGCGGATATATTTCCATTGAAACAAGAACCAAATGTTGCGTCTCCACAGAATGATGAAACGATTGctaatgaaaaagaattgggtACACATTCTGGAATTCACACTGATGAAAAGAATTACGTGTGTAATGTTTGTGataaatCCTACAGTCAAGCAAGCAATTTAGCAAGACATAAAATGATACATACAGGAGTAAAACCCCACGTTTGCGAAGTTTGTGGTAAATCCTTTGGAGAATTGGGTACATTAAAGGTTCATAAATTGTTACATGGTGGTAGTCCTCACGTTTGTGATATTTGTCataaatcattcaATACTGCCAGATATTTGAGAAAACATCAATTGATTCATAGCGGTGAAAAACCtcatgtttgtgatgtttgtgataaatcatttgtGTTTCCAAAAAGTTTGGCTGAACATAAATTTCTTCATGCTAATGAAAAGCCTTATGTTTGCGATGTTTGTGataaatcctaTACGCAAAAGAGTAAGTTAAAACAACATAAAATGATACATACAGGAGTAAAACCATATGTTTGTGAAGTTTGTGataaatctTTTACGCAATCGAGTACATTGAAGGTTCATAAATTGTTACATGGTGGTAGTCCTCACGTTTGTGATATTTGTCataaatcattcaATACTGCCAGATATTTGAGAAACCATCAATTGATTCATAGCGGTGAAAAACCtcatgtttgtgatgtttgtgATAAAGCATTTGTGTTTCCAAAAAGTTTGGCTGAACATAAATTTCTTCATACTAATGACAAGCCTTATGTTTGCGATGTTTGTGataaatcCTATACGCAAAAGAGTAAGTTAAAACAACATAAAATGATACATGCAGGAGTTAAACCCCATGTTTGCGAAGTTTGTGATAAATCTTTTACGCAATCTAGTTCATTGAAGGTTCATAAATTGTTACATGATGGTAGTCCTCACGTTTGTGATATTTGTCaTAAATCGTTTGTTACTGCCAGATATTTGAGAAAACATCGATTGATTCATAGCGGTGAAAAACCtcatgtttgtgatgtttgtgataaatcatttgtGTTTCCAAAAAGTTTGGCTgaacataaattaaatcataCTAATGACAAGCCTTATGTTTGCGATGTTTGTGATAAATCCTTTACGATAAGTAGTAATTTAAAACGACATAAAATGATACATACAGAAGAAAAACCCTACGTTTGTGAAGTTTGTGATAAATCTTTTAAGCAATCGAGTACATTAAAGGTGCATAAATTGCTACATGGCGACAGTCCTCACGTTTGTGATATTTGTCaTAAAACATTCAATACTGCCAGATATTTGAGAAAACATCGATTGATTCATAGCGGTGAAAAACCTCATGTATgcgatgtttgtgataaatcatttttgtaTCCAGAAAGATTGGCTGAACATAAATTTCTTCATACTAATGACAAGCCTTATGTTTGCGATATTTGTGataaatcctTTACTCAAAGTGGTAATTTCAAACGACATAAAATGATACATTCAGGAGTAAAACCCCACGTTTGCGAAGTTTGTGATAAATCTTTTTTGGAATTGCGTACGTTAAAGGATCATAAATTATTACATGGCAACAGTCCTTATGTTTGTGATATTTGTCaTAAGTCATTTGTTACTGCCAGATATTTGAGAAAACATCGATTGATTCATAGCGGTGAAAAACCTCATGTTTGCGATATTTGTGataaatcatttgtGTTTCCAAAAAATTTGGCTGAACATAAATTTCTTCATACTAATGACAAACCCTATGTTTGCGATGTTTGTTgtaaatcCTTTACGCAAAGTAGTAATTTAAAACGTCATAAGAAGATACATACAGGAGTAAAACCCTACGTTTGCGAAGTTTGTGATAAATCTTTTACTCAATCGAATACATTAAAGGATCATAAATTATTACATGGCGACAGGCCTTATGTTTGTGATATTTGTCGTTAG
Protein Sequence: MCAAKVYAYYLFKTNYDDRGKSMETVTNRSWMPSVDPLLIPINSPKSEDNWENTQNQSVEVNSGENQICTKWNTKELCEERNDINLVQKVSPQSSDETNCLIKSEIDISADIFPLKQEPNVASPQNDETIANEKELGTHSGIHTDEKNYVCNVCDKSYSQASNLARHKMIHTGVKPHVCEVCGKSFGELGTLKVHKLLHGGSPHVCDICHKSFNTARYLRKHQLIHSGEKPHVCDVCDKSFVFPKSLAEHKFLHANEKPYVCDVCDKSYTQKSKLKQHKMIHTGVKPYVCEVCDKSFTQSSTLKVHKLLHGGSPHVCDICHKSFNTARYLRNHQLIHSGEKPHVCDVCDKAFVFPKSLAEHKFLHTNDKPYVCDVCDKSYTQKSKLKQHKMIHAGVKPHVCEVCDKSFTQSSSLKVHKLLHDGSPHVCDICHKSFVTARYLRKHRLIHSGEKPHVCDVCDKSFVFPKSLAEHKLNHTNDKPYVCDVCDKSFTISSNLKRHKMIHTEEKPYVCEVCDKSFKQSSTLKVHKLLHGDSPHVCDICHKTFNTARYLRKHRLIHSGEKPHVCDVCDKSFLYPERLAEHKFLHTNDKPYVCDICDKSFTQSGNFKRHKMIHSGVKPHVCEVCDKSFLELRTLKDHKLLHGNSPYVCDICHKSFVTARYLRKHRLIHSGEKPHVCDICDKSFVFPKNLAEHKFLHTNDKPYVCDVCCKSFTQSSNLKRHKKIHTGVKPYVCEVCDKSFTQSNTLKDHKLLHGDRPYVCDICR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349823;
90% Identity: iTF_01349823;
80% Identity: iTF_01349823;