Basic Information

Insect: Sisyra terminalis
Gene Symbol: -
Assembly: GCA_958496175.1
Location: OY292276.1:29257080-29260908[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 1.3e-07 8.5e-06 26.1 0.3 1 23 149 171 149 171 0.98

2 22 0.00027 0.018 15.7 0.3 1 23 177 199 177 199 0.95

3 22 5.3e-06 0.00035 21.1 4.0 1 23 204 226 204 226 0.97

4 22 0.00036 0.023 15.3 0.9 1 23 232 254 232 254 0.93

5 22 8.6e-07 5.7e-05 23.5 1.4 1 23 260 282 260 282 0.98

6 22 4.9e-07 3.3e-05 24.3 0.7 1 23 288 310 288 310 0.97

7 22 7.4e-06 0.00049 20.6 3.6 1 23 315 337 315 337 0.97

8 22 0.0007 0.046 14.4 0.5 1 23 343 365 343 365 0.93

9 22 8.6e-07 5.7e-05 23.5 1.4 1 23 371 393 371 393 0.98

10 22 1.4e-06 9.6e-05 22.8 1.6 1 23 399 421 399 421 0.96

11 22 1e-05 0.00066 20.2 3.5 1 23 426 448 426 448 0.97

12 22 0.00012 0.0078 16.8 0.6 1 23 454 476 454 476 0.96

13 22 2.5e-07 1.6e-05 25.2 0.7 1 23 482 504 482 504 0.98

14 22 5.9e-07 3.9e-05 24.1 0.8 1 23 510 532 510 532 0.97

15 22 1.6e-05 0.0011 19.5 4.5 1 23 537 559 537 559 0.97

16 22 0.072 4.8 8.0 0.7 1 23 565 587 565 587 0.86

17 22 8.5e-08 5.6e-06 26.7 1.1 1 23 593 615 593 615 0.98

18 22 0.031 2 9.2 1.1 1 23 621 643 621 643 0.93

19 22 1.5e-06 9.8e-05 22.8 1.9 1 23 648 670 648 670 0.98

20 22 6.7e-05 0.0044 17.6 0.9 1 23 676 698 676 698 0.93

21 22 1.7e-05 0.0011 19.5 4.2 1 23 704 726 704 726 0.98

22 22 3.5e-06 0.00023 21.6 0.8 1 23 732 754 732 754 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	1.3e-07	8.5e-06	26.1	0.3	1	23	149	171	149	171	0.98
2	22	0.00027	0.018	15.7	0.3	1	23	177	199	177	199	0.95
3	22	5.3e-06	0.00035	21.1	4.0	1	23	204	226	204	226	0.97
4	22	0.00036	0.023	15.3	0.9	1	23	232	254	232	254	0.93
5	22	8.6e-07	5.7e-05	23.5	1.4	1	23	260	282	260	282	0.98
6	22	4.9e-07	3.3e-05	24.3	0.7	1	23	288	310	288	310	0.97
7	22	7.4e-06	0.00049	20.6	3.6	1	23	315	337	315	337	0.97
8	22	0.0007	0.046	14.4	0.5	1	23	343	365	343	365	0.93
9	22	8.6e-07	5.7e-05	23.5	1.4	1	23	371	393	371	393	0.98
10	22	1.4e-06	9.6e-05	22.8	1.6	1	23	399	421	399	421	0.96
11	22	1e-05	0.00066	20.2	3.5	1	23	426	448	426	448	0.97
12	22	0.00012	0.0078	16.8	0.6	1	23	454	476	454	476	0.96
13	22	2.5e-07	1.6e-05	25.2	0.7	1	23	482	504	482	504	0.98
14	22	5.9e-07	3.9e-05	24.1	0.8	1	23	510	532	510	532	0.97
15	22	1.6e-05	0.0011	19.5	4.5	1	23	537	559	537	559	0.97
16	22	0.072	4.8	8.0	0.7	1	23	565	587	565	587	0.86
17	22	8.5e-08	5.6e-06	26.7	1.1	1	23	593	615	593	615	0.98
18	22	0.031	2	9.2	1.1	1	23	621	643	621	643	0.93
19	22	1.5e-06	9.8e-05	22.8	1.9	1	23	648	670	648	670	0.98
20	22	6.7e-05	0.0044	17.6	0.9	1	23	676	698	676	698	0.93
21	22	1.7e-05	0.0011	19.5	4.2	1	23	704	726	704	726	0.98
22	22	3.5e-06	0.00023	21.6	0.8	1	23	732	754	732	754	0.97

Sequence Information

Coding Sequence: ATGTGTGCTGCCAAAGTTTATGCATATTACTTGTTTAAAACAAACTACGATGATAGAGGAAAATCAATGGAAACCGTAACCAATAGATCCTGGATGCCATCTGTAGATCCACTTTTAATTCCGATAAATAGTCCTAAATCAGAAGATAATTGGGAAAACACCCAAAATCAAAGTGTTGAAGTAAATTCGggtgaaaatcaaatttgtacGAAATGGAATACAAAAGAATTATGTGAGGAGAGAAATGATATAAATTTAGTACAGAAAGTGTCTCCACAATCTTCGGATGAGACCAATTGTTTAATCAAATCAGAAATTGATATTTCCGCGGATATATTTCCATTGAAACAAGAACCAAATGTTGCGTCTCCACAGAATGATGAAACGATTGctaatgaaaaagaattgggtACACATTCTGGAATTCACACTGATGAAAAGAATTACGTGTGTAATGTTTGTGataaatCCTACAGTCAAGCAAGCAATTTAGCAAGACATAAAATGATACATACAGGAGTAAAACCCCACGTTTGCGAAGTTTGTGGTAAATCCTTTGGAGAATTGGGTACATTAAAGGTTCATAAATTGTTACATGGTGGTAGTCCTCACGTTTGTGATATTTGTCataaatcattcaATACTGCCAGATATTTGAGAAAACATCAATTGATTCATAGCGGTGAAAAACCtcatgtttgtgatgtttgtgataaatcatttgtGTTTCCAAAAAGTTTGGCTGAACATAAATTTCTTCATGCTAATGAAAAGCCTTATGTTTGCGATGTTTGTGataaatcctaTACGCAAAAGAGTAAGTTAAAACAACATAAAATGATACATACAGGAGTAAAACCATATGTTTGTGAAGTTTGTGataaatctTTTACGCAATCGAGTACATTGAAGGTTCATAAATTGTTACATGGTGGTAGTCCTCACGTTTGTGATATTTGTCataaatcattcaATACTGCCAGATATTTGAGAAACCATCAATTGATTCATAGCGGTGAAAAACCtcatgtttgtgatgtttgtgATAAAGCATTTGTGTTTCCAAAAAGTTTGGCTGAACATAAATTTCTTCATACTAATGACAAGCCTTATGTTTGCGATGTTTGTGataaatcCTATACGCAAAAGAGTAAGTTAAAACAACATAAAATGATACATGCAGGAGTTAAACCCCATGTTTGCGAAGTTTGTGATAAATCTTTTACGCAATCTAGTTCATTGAAGGTTCATAAATTGTTACATGATGGTAGTCCTCACGTTTGTGATATTTGTCaTAAATCGTTTGTTACTGCCAGATATTTGAGAAAACATCGATTGATTCATAGCGGTGAAAAACCtcatgtttgtgatgtttgtgataaatcatttgtGTTTCCAAAAAGTTTGGCTgaacataaattaaatcataCTAATGACAAGCCTTATGTTTGCGATGTTTGTGATAAATCCTTTACGATAAGTAGTAATTTAAAACGACATAAAATGATACATACAGAAGAAAAACCCTACGTTTGTGAAGTTTGTGATAAATCTTTTAAGCAATCGAGTACATTAAAGGTGCATAAATTGCTACATGGCGACAGTCCTCACGTTTGTGATATTTGTCaTAAAACATTCAATACTGCCAGATATTTGAGAAAACATCGATTGATTCATAGCGGTGAAAAACCTCATGTATgcgatgtttgtgataaatcatttttgtaTCCAGAAAGATTGGCTGAACATAAATTTCTTCATACTAATGACAAGCCTTATGTTTGCGATATTTGTGataaatcctTTACTCAAAGTGGTAATTTCAAACGACATAAAATGATACATTCAGGAGTAAAACCCCACGTTTGCGAAGTTTGTGATAAATCTTTTTTGGAATTGCGTACGTTAAAGGATCATAAATTATTACATGGCAACAGTCCTTATGTTTGTGATATTTGTCaTAAGTCATTTGTTACTGCCAGATATTTGAGAAAACATCGATTGATTCATAGCGGTGAAAAACCTCATGTTTGCGATATTTGTGataaatcatttgtGTTTCCAAAAAATTTGGCTGAACATAAATTTCTTCATACTAATGACAAACCCTATGTTTGCGATGTTTGTTgtaaatcCTTTACGCAAAGTAGTAATTTAAAACGTCATAAGAAGATACATACAGGAGTAAAACCCTACGTTTGCGAAGTTTGTGATAAATCTTTTACTCAATCGAATACATTAAAGGATCATAAATTATTACATGGCGACAGGCCTTATGTTTGTGATATTTGTCGTTAG
Protein Sequence: MCAAKVYAYYLFKTNYDDRGKSMETVTNRSWMPSVDPLLIPINSPKSEDNWENTQNQSVEVNSGENQICTKWNTKELCEERNDINLVQKVSPQSSDETNCLIKSEIDISADIFPLKQEPNVASPQNDETIANEKELGTHSGIHTDEKNYVCNVCDKSYSQASNLARHKMIHTGVKPHVCEVCGKSFGELGTLKVHKLLHGGSPHVCDICHKSFNTARYLRKHQLIHSGEKPHVCDVCDKSFVFPKSLAEHKFLHANEKPYVCDVCDKSYTQKSKLKQHKMIHTGVKPYVCEVCDKSFTQSSTLKVHKLLHGGSPHVCDICHKSFNTARYLRNHQLIHSGEKPHVCDVCDKAFVFPKSLAEHKFLHTNDKPYVCDVCDKSYTQKSKLKQHKMIHAGVKPHVCEVCDKSFTQSSSLKVHKLLHDGSPHVCDICHKSFVTARYLRKHRLIHSGEKPHVCDVCDKSFVFPKSLAEHKLNHTNDKPYVCDVCDKSFTISSNLKRHKMIHTEEKPYVCEVCDKSFKQSSTLKVHKLLHGDSPHVCDICHKTFNTARYLRKHRLIHSGEKPHVCDVCDKSFLYPERLAEHKFLHTNDKPYVCDICDKSFTQSGNFKRHKMIHSGVKPHVCEVCDKSFLELRTLKDHKLLHGNSPYVCDICHKSFVTARYLRKHRLIHSGEKPHVCDICDKSFVFPKNLAEHKFLHTNDKPYVCDVCCKSFTQSSNLKRHKKIHTGVKPYVCEVCDKSFTQSNTLKDHKLLHGDRPYVCDICR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01350130;
90% Identity: iTF_01350130;
80% Identity: iTF_01350130;