Snig006159.1
Basic Information
- Insect
- Sisyra nigra
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958496155.1
- Location
- OY292314.1:37171785-37178799[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-107 1.1e-102 343.7 31.6 1 299 219 554 219 555 0.90 2 2 0.007 1.5e+02 1.7 4.0 193 238 585 629 561 630 0.73
Sequence Information
- Coding Sequence
- ATGCTTAgcattgaacattttacaaatccaACGAAACGCCACCACCACATTATTGGCGACAACGCTAGCGGCGACGATACCGTCATCGTCGGGGCGAAAACCACTAATAATTGTGACGATAACGATAACAAAAGCGGTGTTGACATTTGTACTCAATGCTcgaaatgttttgaaaattctaGTCGAAAAGGTGGGGAAATATATCATATGATGAACGAGGATGACGAAAGTCACACGATGGAGTTGCTACGAATTGTTGAGGAAGGCGACGAAATAAAAAttcccaataaaattaattgtgatAATGAAAATCTACCTAATCTTAGTGTTGAATCAGAACTTGAAGACGGCGATGACGAAGGTAGTGCGTATTCGGACGCTGATTTAGATATCGAGTGTAGTGATAGTGAAACTCTAGACGAACGTTTTGATAGTATTAGTAGTAGCAACAATAAAAGTTCGAGTAACGACGATGAAAATATTACGAGTAAACCCCCCATCGAAGTTATCGAAACATTTGATGATAATCTTGAAGATGTTAATCTGGAAAAGGATAATGGAAGTTTACATGATGATGAAAACTGGGATAGTAGAGAAACACCTGTTACCACCCCAGAttatattaatgattttttggaCAAATGTAGTGATAATGCGGAGGCTCGATTGGCGGCCAGAAGACAAGCGCGAGCTGAGGCGAGGGAAATTCGAATGCGTGAACTGGAACGCCAACAACGTGAACAAGAGGAAAATGCTGACAGAGTTTATGATATGTATGCCGatccGGTGACAAGAAGTGCAGCTACGACTCGATTAGCGACAGGTACAAGATCGACAATGCTCTCAAACAGTAGTTATCATTCAAGTCGTCGAAGCTCGGAAGATTCCTTAGAAGATGGAGGCAGTTTGCGCGATATTCGTATGGAATTACGTGAGCTGGAAGACAAATTTCGCAAAGCGATGATAGCCAATGCTCAACTAGATAACGATAAGGCCTCATACACGTATCAAATAGAACTGTTAAAAGATCGTCTCGAAGACTTGGAACAGGACCATTCGCAACTGCAGCGAGAACATCGTGACAAATGTCGCGAGTTCGAGCAGCTGAAACGTGTCGCTGCCAAGCTTAAAGACGATTTGACTTTCGTTAAATTTCAATTAGATGAGCGTGACACGTTAATTGCTGAAAAGGGTTTAGTTATTATTTCGTGTGAGGAAAATGGAGATGGAATCGAAAATGGAAGTACTGCAAATCACAATGGAACTTTAGAAGGAGATGAAGACGAACTGGGCGCTGGAGGTGATATAAATAGTAGTCGAATTAAAAGTCCCAAAAAGGCTTTAGTTAGTTTGGAAAACGCTGCGCTTTTAGAATCCGCTGGTGAAGGTAGTTTagatgtaagacttaaaaaattcTCAGAAGAGAAAAAAGATTTAGAAGATAAATTACGATCACTACGAATTGAATTGGATGAAGAACGGAATAAGACAAGAAGGCGGCGATCAAGCAATAATTCAACTCTGATTGGAAACTCAATCACGCACAATGGACCTGAGGGTGAACTTTTAGATAATATGGACATTTTAGATATTCAACgtgAAGCAAATAAACAACTAGCggattataaatttaagatgCAAAAAGCGGAACAAGACATTGCCTCACTACAAGGTGCCGTAGCCCGTTTGGAAAGTCAAGTGGTTCGATATCGTGCCGCAGCCGAGGCTTCAGAACGAGCTGAAGATGAGCTGAAAGTCGAAAAGAGAAAATTACAAAGAGAGgCCCGAGAATCGCAGAGCAGAGTTGAAGAGCTCGAAACTGCAAATAGCCATTTGCAAAAACGTTTGGACAAGTTGAAAAATGCAAAATCAACGTTGTTGAAGGAACTCTGA
- Protein Sequence
- MLSIEHFTNPTKRHHHIIGDNASGDDTVIVGAKTTNNCDDNDNKSGVDICTQCSKCFENSSRKGGEIYHMMNEDDESHTMELLRIVEEGDEIKIPNKINCDNENLPNLSVESELEDGDDEGSAYSDADLDIECSDSETLDERFDSISSSNNKSSSNDDENITSKPPIEVIETFDDNLEDVNLEKDNGSLHDDENWDSRETPVTTPDYINDFLDKCSDNAEARLAARRQARAEAREIRMRELERQQREQEENADRVYDMYADPVTRSAATTRLATGTRSTMLSNSSYHSSRRSSEDSLEDGGSLRDIRMELRELEDKFRKAMIANAQLDNDKASYTYQIELLKDRLEDLEQDHSQLQREHRDKCREFEQLKRVAAKLKDDLTFVKFQLDERDTLIAEKGLVIISCEENGDGIENGSTANHNGTLEGDEDELGAGGDINSSRIKSPKKALVSLENAALLESAGEGSLDVRLKKFSEEKKDLEDKLRSLRIELDEERNKTRRRRSSNNSTLIGNSITHNGPEGELLDNMDILDIQREANKQLADYKFKMQKAEQDIASLQGAVARLESQVVRYRAAAEASERAEDELKVEKRKLQREARESQSRVEELETANSHLQKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01349645;
- 90% Identity
- -
- 80% Identity
- -