Salt023307.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- MBD4
- Assembly
- GCA_949825025.1
- Location
- OX463788.1:4213504-4215645[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-20 5.2e-17 61.9 0.2 8 72 106 169 101 174 0.93 2 2 2.5 8.8e+03 -3.0 0.0 45 58 628 641 627 647 0.81
Sequence Information
- Coding Sequence
- ATGGACGACGAAGAAAAGTCTGTCATAAAACTACACACACTTGAAAATGGAGATACTGTATGCTTAGCTTCTAACACAGATATTTCCTCTAAAGATTTTGGAGAAGTAAAGGGGTTTGAGAATGAAAAAGAGGAAGAAAAAGAAGCAGAAACTGAAACTAACTCCTCTTTCTTCATTGATGATGTACCCACCAGAAAAATCAAATTAGGCAGACCCAAGTCTTTCAAGTCACCTCAAGGAGTACctgcaataaagaaaaaagGACGTGGCAAACAAACAAGCTGCGAAGATAATGAAGATTATGAAAGCCTATTTGAAAAACCACTGCCAGATGGCTGGTCGCGTAAAGTAAGCCAACGGAAATCAGGAACATCTGCAGGAAAATATGATGTGTACATTTTCAGCCCTAGCGGACAAAAATTCCGTTCGCGAAAAGAATTGTCCTCATATTTTGAACAGGGAAATCTGACACATTATGATATAAGTGATTTTCAATTTGGAGTAGCATCACCAAAAGTTCAAAAAggaggtaaaaaaattacaaaagataATGTTATACCGCCTCTGCTGTCCATGGCACCTACATCAATCAAAATTGCCAAACTAGGAAAAATCAAAGGAAAAGCTAAAGCTTCATCCTCTGCCTCAAAACTAGTAATGTCTGACAAACCATCAACTTCTGCAGCAACGTTGCTCAGTAACAAAAAGTATACTCTGATCACTAACAGCCTTtttggtaagaaaaatataaagaaaggtGATCCTGCAGTTCGAGTCAAGGAGCAAAAATCTTTCCTCCGAGAGAAATCGGAAGTTAAAAAAGAGAACATTGTTGATGAAGAAAAACCTGCCGAAATGGATTCAAAAGCCAAGAAACACAAGATGGTGATTGAAGATGACAGTCAGCCTAAAGTAAAGAAAATGAAGACAGTCAAAGAAAAGCAACCTGCTAAAGAAGAGGAATCAAAAATCGAAGAACAAAAGACTTTCCACTCTGAAAAGCCATCAGATGTTGACCCCAAGATAAAAAAGTTTGTCCTGGAGACTCAACAGCTTCCTTCCTTTGATGAAATATCTGCTGGCGGTGAGAAACAGGTGAAAAAACAGAAGACCCTCTTTGAGAAGACGTTGTCTGAGATTGAATTACAAGCAATAAAACCAAAGATAGATAAGTCTGCCAAGGCATCATCTTCTAAAATAATAGTTCCTGCATCAAACAAGATTTCCACGTCAAACGTTGGCATCAAGTCTAAGAAACAAGGTTTTGGTCAACTCTTAAAACCTTCTTCTAAAAAATTTGGACTGGTGATGACAAAGTTCAAGCCATTTTGTCCTCCAAACAGCCCTCTCATGAAATCTCCAACTTCTCAATTCACACCTAAAAATGAAAAGGCCACACATGCATCTCGCAGTACTGAACAAGGAGAAGTGGAAAGTACAAATGATAAAACTGTCATAAAGCGAGGCAGAGGACGTCCTCGTAAAGATAAGATGgatgaattaaataaatctcAGCTTAATGCAACTGATGAAAAAGAACTGATAAAAGATATTtctaacaaaaaattgtcagtGACGTTAATCAGGTGTGCTGCTGAAGCTGTATCAACAAATGGAAATCTCGTGAATGGTGACAGTGTAACTTACGGTGACAAAGTTAAAAAGACTAAACTTGTGCCATTAGTCCGTGGTGCTCAAGAAAAATCCATGTGGATCCCTCCAACATCACCTTACAATCTTGTCTATGAAAAACTGTATGAATCACCTTGGAAACTTCTAACTGCAACAATCATTATGAAAAACTCAACAGCCAGAGTAGGAACAACTTTGGTATGGAAATTTTTTGAAGTTTATCTTACTGTGAAAACTGTACAAAATGCATCTGAATCTGAACTTGCAACATTCCTTAGAGCCACGACTGAACCTGAAAAATGTGCCCGTAAAATCAAGGGATTAGCAAGTGACTTGGAGACTAAAGCCTGGATCTACCCAACTGAATTATCTGGTATTGGCAAGTATGGATGTGATGCCTACAGAATTTTCTGTTTGAACGAATGGCGTGAAGTGCGTCCAGACAATGACTTTGACCTTACCATGTACCACAACTGGCTTCGTCAGAATGCTAAAGCTCTCGGAGTGTAA
- Protein Sequence
- MDDEEKSVIKLHTLENGDTVCLASNTDISSKDFGEVKGFENEKEEEKEAETETNSSFFIDDVPTRKIKLGRPKSFKSPQGVPAIKKKGRGKQTSCEDNEDYESLFEKPLPDGWSRKVSQRKSGTSAGKYDVYIFSPSGQKFRSRKELSSYFEQGNLTHYDISDFQFGVASPKVQKGGKKITKDNVIPPLLSMAPTSIKIAKLGKIKGKAKASSSASKLVMSDKPSTSAATLLSNKKYTLITNSLFGKKNIKKGDPAVRVKEQKSFLREKSEVKKENIVDEEKPAEMDSKAKKHKMVIEDDSQPKVKKMKTVKEKQPAKEEESKIEEQKTFHSEKPSDVDPKIKKFVLETQQLPSFDEISAGGEKQVKKQKTLFEKTLSEIELQAIKPKIDKSAKASSSKIIVPASNKISTSNVGIKSKKQGFGQLLKPSSKKFGLVMTKFKPFCPPNSPLMKSPTSQFTPKNEKATHASRSTEQGEVESTNDKTVIKRGRGRPRKDKMDELNKSQLNATDEKELIKDISNKKLSVTLIRCAAEAVSTNGNLVNGDSVTYGDKVKKTKLVPLVRGAQEKSMWIPPTSPYNLVYEKLYESPWKLLTATIIMKNSTARVGTTLVWKFFEVYLTVKTVQNASESELATFLRATTEPEKCARKIKGLASDLETKAWIYPTELSGIGKYGCDAYRIFCLNEWREVRPDNDFDLTMYHNWLRQNAKALGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01348019; iTF_01348021;
- 90% Identity
- iTF_01348019;
- 80% Identity
- -