Smay004011.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- -
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000246.1:231352-233541[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0018 75 4.8 0.0 26 45 21 40 16 45 0.88 2 18 0.0057 2.4e+02 3.1 0.0 26 45 55 74 45 79 0.84 3 18 0.0034 1.4e+02 3.9 0.0 18 45 82 108 78 117 0.83 4 18 0.0027 1.1e+02 4.2 0.0 26 45 123 142 113 149 0.86 5 18 0.3 1.3e+04 -2.4 0.0 26 45 157 176 152 182 0.82 6 18 0.023 9.7e+02 1.2 0.0 22 45 187 210 175 215 0.81 7 18 0.016 6.9e+02 1.7 0.0 23 45 222 244 215 251 0.84 8 18 0.0024 1e+02 4.4 0.0 23 45 256 278 249 286 0.85 9 18 0.00097 41 5.6 0.0 22 45 289 312 282 317 0.85 10 18 0.044 1.9e+03 0.3 0.0 22 45 357 380 349 387 0.82 11 18 0.001 43 5.5 0.0 24 45 393 414 385 421 0.86 12 18 0.0018 76 4.7 0.0 23 45 426 448 419 458 0.83 13 18 0.1 4.3e+03 -0.9 0.0 23 45 460 482 451 489 0.80 14 18 0.038 1.6e+03 0.5 0.1 23 45 494 516 487 524 0.81 15 18 0.048 2e+03 0.2 0.0 23 45 528 550 521 556 0.82 16 18 0.00071 30 6.0 0.1 21 45 561 584 555 592 0.83 17 18 0.0023 97 4.4 0.0 23 45 596 618 589 626 0.85 18 18 0.41 1.7e+04 -2.8 0.1 26 45 633 652 628 655 0.77
Sequence Information
- Coding Sequence
- ATGAAAAATCATATGAAGATACATTCATTAGAAGCTGATCTAGTATTGGAAGAAGAATACAAATGTTCTATTTGTAATAAGGTGGTGACtagttctttaattttaaagaagcATTTGAAAAAACACTCAATAGAATCTTCTCATGCTATGAAGGAACAATACAAATGTGATATTTGTAATAAGGTATTGTCTAGTTCATTAGTTTTGAAGAAACATATGAAAAAACATGCAATAGAGACTGCTCGTGCTAAAGAAGAACAATACAAATGTGATATTTGTAATAAGATAGTGTCTAGTTCATTAGTTTTGAAGAAGCATatgaaaaaacattcaatagAATCTGCTCATCCTATGAAGGAACAATACAAATGTGCTATTTGTAATAAAGTAGTGTCTAGTTCATTAGTTTTGAAGAAACACATgaaaaaacatacaataaagGCTGCTTGTGCTAAGGGAGAACAATACAAATGTGTTATTTGTAATAAGATAGTGTCTAGTTTGTTAGTTTTGAAGAAACATatgaaaaaacattcaatagAATCTGCTCATTCTATGGAAGAACAATACAAATGTTCTATTTGTAATAAGGTAGTGACTAGTTTGTTAGTTTTGAAGAAACATatgaaaaaacattcaatagAATCTGTTCATGCTATGGAAGAACAATACAAATGTTCTATTTGTAATAAGGTAGTgactagttttttaattttaaagaagcATTTGAAAAAACACTCAATAGAATCTGCTCATGCTATGGAGGAACAATACAAGTGTGATATTTGTAATAAGGTAGTGTCTAGTTCGTTAGTTTTGAAGAAACATATGAAAAAACATACAATAGAATCTGCTCATGCTATGGAAGAACAATACAAATGTTCTATTTGTAATAAGGTAGTGACtagttctttaattttaaagaaacatttgaaaaaacacTCAATAGAATTTTTTCATGCTATAAAGGAACAATACAAATGtggtatttgtaataaaatagtgTCTAGTTTATTAGTTTTGAACAAACACATgaaaaaacatacaataaagGCTACTTGTGCTAAGGAAGAACAATACAAATGTGTTATTTGTAATAAGGTAGTGTCTAGTTTCTTAGTTTTGAAGAAACATATGAAAAAACATACAATAGAGGCTGCTTGTGTTAAGGAAGAACAATACAAATGTGCTATTTGTAATAAGGTAGTGACtagttctttaattttaaagaagcATTTGAAAAAACACTCAATAGAATCTGCTCATGCTATGGAGGAACAATACAAGTGTGATATTTGTAATAAGGTAGTGTCTAGTTCATTAGTTTTGAAGAAACATATgaaaaaacatacaataaagGCGGCTCCTGCTAAGGAAGAACAATACAAATGtggtatttgtaataaaatagtgTCTAGTTTATTAGTTTTGAAGAAACACATgaaaaaacatacaataaagGCTGCTTGTGCTAAGGAAGAACAATACAAATGTGTTATTTGTAATAAGGTAGTGTCTAGTTTCTTAGTTTTGAAGAAACATATgaaaaaacatacaataaagGCTGCTTGTGCTAAGGAAGAACAATACAAATGTGTTATTTGTAATAAGGTAGTGTCTAGTTTCTTAGTTTTGAAGAAACATatgaaaaaacattcaatagAGGCTGCTCGTGTTAAGGAAGAACAATACAAATGTTCTATTTGTAATAAGGTAGTGACtagttctttaattttaaagaagcATTTGAAAAAACACTCAATAGAATCTGCTCATGCTATGGAGGAACAATACAAGTGTGATATTTGTAATAAGGTAGTGTCTAGTTCATTAGTTTTGAAGAAACATATGAAAAAACATACAATAGAGGCGGCTCCTGCTAAGGAAGAACAATACAAATGTGTTAATTGTAATAAAGTAGTGTCTAGTTTGTTAGTTTTGAAGAGACATATAAAgaaacatttgataaatactaGTCAGACTATGAAGAAACGATACAAATGTGACAGTTGTAATAAGGTGCTGTCTAGTTCGTCACTTGTAAAAAAGCCTATGAAGAGACATACAAAaaaggttattaaaaaatttgatatctGTGAAAAGCTATTTAATAGCGAGTTGGCCTTGTTACAACACAGAAAAATCAACACTCTATGTTCAAGACAATCTTCAAATAACTGCTATTCTTAA
- Protein Sequence
- MKNHMKIHSLEADLVLEEEYKCSICNKVVTSSLILKKHLKKHSIESSHAMKEQYKCDICNKVLSSSLVLKKHMKKHAIETARAKEEQYKCDICNKIVSSSLVLKKHMKKHSIESAHPMKEQYKCAICNKVVSSSLVLKKHMKKHTIKAACAKGEQYKCVICNKIVSSLLVLKKHMKKHSIESAHSMEEQYKCSICNKVVTSLLVLKKHMKKHSIESVHAMEEQYKCSICNKVVTSFLILKKHLKKHSIESAHAMEEQYKCDICNKVVSSSLVLKKHMKKHTIESAHAMEEQYKCSICNKVVTSSLILKKHLKKHSIEFFHAIKEQYKCGICNKIVSSLLVLNKHMKKHTIKATCAKEEQYKCVICNKVVSSFLVLKKHMKKHTIEAACVKEEQYKCAICNKVVTSSLILKKHLKKHSIESAHAMEEQYKCDICNKVVSSSLVLKKHMKKHTIKAAPAKEEQYKCGICNKIVSSLLVLKKHMKKHTIKAACAKEEQYKCVICNKVVSSFLVLKKHMKKHTIKAACAKEEQYKCVICNKVVSSFLVLKKHMKKHSIEAARVKEEQYKCSICNKVVTSSLILKKHLKKHSIESAHAMEEQYKCDICNKVVSSSLVLKKHMKKHTIEAAPAKEEQYKCVNCNKVVSSLLVLKRHIKKHLINTSQTMKKRYKCDSCNKVLSSSSLVKKPMKRHTKKVIKKFDICEKLFNSELALLQHRKINTLCSRQSSNNCYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01347444;
- 90% Identity
- iTF_01347444;
- 80% Identity
- iTF_01347444;