Smay004011.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- -
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000246.1:231352-233541[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00047 0.088 14.5 1.2 1 23 20 42 20 42 0.99 2 21 1.4e-05 0.0026 19.3 1.2 1 23 54 76 54 76 0.99 3 21 3.1e-05 0.0057 18.2 1.0 1 23 88 110 88 110 0.99 4 21 2.8e-05 0.0051 18.4 0.7 1 23 122 144 122 144 0.99 5 21 0.00027 0.05 15.3 0.7 1 23 156 178 156 178 0.99 6 21 3.4e-05 0.0064 18.1 1.1 1 23 190 212 190 212 0.99 7 21 0.0032 0.58 11.9 1.6 1 23 224 246 224 246 0.98 8 21 1.1e-05 0.002 19.7 0.9 1 23 258 280 258 280 0.99 9 21 0.00047 0.088 14.5 1.2 1 23 292 314 292 314 0.99 10 21 0.00017 0.031 15.9 0.5 1 23 326 348 326 348 0.99 11 21 0.00023 0.043 15.5 1.1 1 23 360 382 360 382 0.99 12 21 0.001 0.19 13.4 0.7 1 23 394 416 394 416 0.99 13 21 1.1e-05 0.002 19.7 0.9 1 23 428 450 428 450 0.99 14 21 0.00014 0.026 16.2 0.6 1 23 462 484 462 484 0.99 15 21 0.00023 0.043 15.5 1.1 1 23 496 518 496 518 0.99 16 21 0.00023 0.043 15.5 1.1 1 23 530 552 530 552 0.99 17 21 0.00047 0.088 14.5 1.2 1 23 564 586 564 586 0.99 18 21 1.1e-05 0.002 19.7 0.9 1 23 598 620 598 620 0.99 19 21 0.00039 0.072 14.8 0.7 1 23 632 654 632 654 0.99 20 21 0.068 13 7.7 0.4 1 18 666 683 666 688 0.87 21 21 5.4 1e+03 1.7 0.0 5 21 698 714 697 715 0.91
Sequence Information
- Coding Sequence
- ATGAAAAATCATATGAAGATACATTCATTAGAAGCTGATCTAGTATTGGAAGAAGAATACAAATGTTCTATTTGTAATAAGGTGGTGACtagttctttaattttaaagaagcATTTGAAAAAACACTCAATAGAATCTTCTCATGCTATGAAGGAACAATACAAATGTGATATTTGTAATAAGGTATTGTCTAGTTCATTAGTTTTGAAGAAACATATGAAAAAACATGCAATAGAGACTGCTCGTGCTAAAGAAGAACAATACAAATGTGATATTTGTAATAAGATAGTGTCTAGTTCATTAGTTTTGAAGAAGCATatgaaaaaacattcaatagAATCTGCTCATCCTATGAAGGAACAATACAAATGTGCTATTTGTAATAAAGTAGTGTCTAGTTCATTAGTTTTGAAGAAACACATgaaaaaacatacaataaagGCTGCTTGTGCTAAGGGAGAACAATACAAATGTGTTATTTGTAATAAGATAGTGTCTAGTTTGTTAGTTTTGAAGAAACATatgaaaaaacattcaatagAATCTGCTCATTCTATGGAAGAACAATACAAATGTTCTATTTGTAATAAGGTAGTGACTAGTTTGTTAGTTTTGAAGAAACATatgaaaaaacattcaatagAATCTGTTCATGCTATGGAAGAACAATACAAATGTTCTATTTGTAATAAGGTAGTgactagttttttaattttaaagaagcATTTGAAAAAACACTCAATAGAATCTGCTCATGCTATGGAGGAACAATACAAGTGTGATATTTGTAATAAGGTAGTGTCTAGTTCGTTAGTTTTGAAGAAACATATGAAAAAACATACAATAGAATCTGCTCATGCTATGGAAGAACAATACAAATGTTCTATTTGTAATAAGGTAGTGACtagttctttaattttaaagaaacatttgaaaaaacacTCAATAGAATTTTTTCATGCTATAAAGGAACAATACAAATGtggtatttgtaataaaatagtgTCTAGTTTATTAGTTTTGAACAAACACATgaaaaaacatacaataaagGCTACTTGTGCTAAGGAAGAACAATACAAATGTGTTATTTGTAATAAGGTAGTGTCTAGTTTCTTAGTTTTGAAGAAACATATGAAAAAACATACAATAGAGGCTGCTTGTGTTAAGGAAGAACAATACAAATGTGCTATTTGTAATAAGGTAGTGACtagttctttaattttaaagaagcATTTGAAAAAACACTCAATAGAATCTGCTCATGCTATGGAGGAACAATACAAGTGTGATATTTGTAATAAGGTAGTGTCTAGTTCATTAGTTTTGAAGAAACATATgaaaaaacatacaataaagGCGGCTCCTGCTAAGGAAGAACAATACAAATGtggtatttgtaataaaatagtgTCTAGTTTATTAGTTTTGAAGAAACACATgaaaaaacatacaataaagGCTGCTTGTGCTAAGGAAGAACAATACAAATGTGTTATTTGTAATAAGGTAGTGTCTAGTTTCTTAGTTTTGAAGAAACATATgaaaaaacatacaataaagGCTGCTTGTGCTAAGGAAGAACAATACAAATGTGTTATTTGTAATAAGGTAGTGTCTAGTTTCTTAGTTTTGAAGAAACATatgaaaaaacattcaatagAGGCTGCTCGTGTTAAGGAAGAACAATACAAATGTTCTATTTGTAATAAGGTAGTGACtagttctttaattttaaagaagcATTTGAAAAAACACTCAATAGAATCTGCTCATGCTATGGAGGAACAATACAAGTGTGATATTTGTAATAAGGTAGTGTCTAGTTCATTAGTTTTGAAGAAACATATGAAAAAACATACAATAGAGGCGGCTCCTGCTAAGGAAGAACAATACAAATGTGTTAATTGTAATAAAGTAGTGTCTAGTTTGTTAGTTTTGAAGAGACATATAAAgaaacatttgataaatactaGTCAGACTATGAAGAAACGATACAAATGTGACAGTTGTAATAAGGTGCTGTCTAGTTCGTCACTTGTAAAAAAGCCTATGAAGAGACATACAAAaaaggttattaaaaaatttgatatctGTGAAAAGCTATTTAATAGCGAGTTGGCCTTGTTACAACACAGAAAAATCAACACTCTATGTTCAAGACAATCTTCAAATAACTGCTATTCTTAA
- Protein Sequence
- MKNHMKIHSLEADLVLEEEYKCSICNKVVTSSLILKKHLKKHSIESSHAMKEQYKCDICNKVLSSSLVLKKHMKKHAIETARAKEEQYKCDICNKIVSSSLVLKKHMKKHSIESAHPMKEQYKCAICNKVVSSSLVLKKHMKKHTIKAACAKGEQYKCVICNKIVSSLLVLKKHMKKHSIESAHSMEEQYKCSICNKVVTSLLVLKKHMKKHSIESVHAMEEQYKCSICNKVVTSFLILKKHLKKHSIESAHAMEEQYKCDICNKVVSSSLVLKKHMKKHTIESAHAMEEQYKCSICNKVVTSSLILKKHLKKHSIEFFHAIKEQYKCGICNKIVSSLLVLNKHMKKHTIKATCAKEEQYKCVICNKVVSSFLVLKKHMKKHTIEAACVKEEQYKCAICNKVVTSSLILKKHLKKHSIESAHAMEEQYKCDICNKVVSSSLVLKKHMKKHTIKAAPAKEEQYKCGICNKIVSSLLVLKKHMKKHTIKAACAKEEQYKCVICNKVVSSFLVLKKHMKKHTIKAACAKEEQYKCVICNKVVSSFLVLKKHMKKHSIEAARVKEEQYKCSICNKVVTSSLILKKHLKKHSIESAHAMEEQYKCDICNKVVSSSLVLKKHMKKHTIEAAPAKEEQYKCVNCNKVVSSLLVLKRHIKKHLINTSQTMKKRYKCDSCNKVLSSSSLVKKPMKRHTKKVIKKFDICEKLFNSELALLQHRKINTLCSRQSSNNCYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01347647;
- 90% Identity
- iTF_01347647;
- 80% Identity
- iTF_01347647;