Basic Information

Insect: Sipha maydis
Gene Symbol: L
Assembly: GCA_034509805.1
Location: JASXSY010000408.1:60882-78974[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 1.5 2.8e+02 3.4 7.0 1 23 30 52 30 52 0.97

2 21 6.2e-07 0.00012 23.5 5.6 1 23 58 80 58 80 0.99

3 21 7.8e-06 0.0014 20.1 0.9 1 23 86 108 86 109 0.96

4 21 0.00012 0.022 16.4 2.0 1 23 126 148 126 149 0.96

5 21 0.027 5 9.0 0.4 1 23 174 197 174 197 0.97

6 21 2.7 5e+02 2.7 1.0 1 23 235 258 235 258 0.94

7 21 0.0042 0.77 11.5 2.3 2 23 444 465 443 465 0.94

8 21 0.00018 0.033 15.8 1.0 1 23 473 496 473 496 0.95

9 21 0.00014 0.027 16.1 0.6 1 23 501 524 501 524 0.95

10 21 0.00057 0.11 14.2 0.8 2 23 579 600 578 600 0.96

11 21 0.073 13 7.6 3.6 1 23 604 626 604 627 0.96

12 21 6.4 1.2e+03 1.5 0.5 3 23 671 693 670 693 0.80

13 21 0.0011 0.2 13.4 4.6 2 23 707 728 706 728 0.96

14 21 0.0024 0.44 12.3 0.3 1 23 739 761 739 761 0.98

15 21 0.31 58 5.6 1.5 2 23 769 790 768 790 0.97

16 21 1.8e-05 0.0033 19.0 1.0 2 23 865 887 865 887 0.97

17 21 0.12 22 6.9 1.3 1 23 891 913 891 913 0.97

18 21 0.2 36 6.2 0.0 2 23 925 946 924 946 0.95

19 21 0.0054 1 11.2 0.0 1 23 954 977 954 977 0.97

20 21 0.54 1e+02 4.9 0.2 1 23 984 1008 984 1008 0.95

21 21 1.5 2.8e+02 3.5 4.8 1 23 1035 1058 1035 1062 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	1.5	2.8e+02	3.4	7.0	1	23	30	52	30	52	0.97
2	21	6.2e-07	0.00012	23.5	5.6	1	23	58	80	58	80	0.99
3	21	7.8e-06	0.0014	20.1	0.9	1	23	86	108	86	109	0.96
4	21	0.00012	0.022	16.4	2.0	1	23	126	148	126	149	0.96
5	21	0.027	5	9.0	0.4	1	23	174	197	174	197	0.97
6	21	2.7	5e+02	2.7	1.0	1	23	235	258	235	258	0.94
7	21	0.0042	0.77	11.5	2.3	2	23	444	465	443	465	0.94
8	21	0.00018	0.033	15.8	1.0	1	23	473	496	473	496	0.95
9	21	0.00014	0.027	16.1	0.6	1	23	501	524	501	524	0.95
10	21	0.00057	0.11	14.2	0.8	2	23	579	600	578	600	0.96
11	21	0.073	13	7.6	3.6	1	23	604	626	604	627	0.96
12	21	6.4	1.2e+03	1.5	0.5	3	23	671	693	670	693	0.80
13	21	0.0011	0.2	13.4	4.6	2	23	707	728	706	728	0.96
14	21	0.0024	0.44	12.3	0.3	1	23	739	761	739	761	0.98
15	21	0.31	58	5.6	1.5	2	23	769	790	768	790	0.97
16	21	1.8e-05	0.0033	19.0	1.0	2	23	865	887	865	887	0.97
17	21	0.12	22	6.9	1.3	1	23	891	913	891	913	0.97
18	21	0.2	36	6.2	0.0	2	23	925	946	924	946	0.95
19	21	0.0054	1	11.2	0.0	1	23	954	977	954	977	0.97
20	21	0.54	1e+02	4.9	0.2	1	23	984	1008	984	1008	0.95
21	21	1.5	2.8e+02	3.5	4.8	1	23	1035	1058	1035	1062	0.92

Sequence Information

Coding Sequence: ATGTCGTCACGCGCGAGGCTTGGCGACCCGGTGCGCGAACGTTCGCCTACCCGTCCGAGTGACCGGaCTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGGGACCGACACGTGAAATTGCACACAGGGGACAAGAAATACAAGTGTACTCAGTGCGATCATGCTTTTTCAAGGAGTGATCACTTAAAGATCCACATGAAAACGCATGACAATCAAAAACCGTTCCAGTGCACGGTGTGCAACAGAGGTTACAGCACGGCGGCTGCGCTCACGTCGCATATGCAAAACCATCATAAACGTGCCGCGGAACGAGCAAACTCACCGCAGATCTCCGGTCCGTCGTACAAGTGTCTGCAGTGCACTCAGATATTCCGCAAGCCCGACGAGTTGCAGAACCACACGGCGACGCATCACCTGGGCGAACAATTGTCGTCGAATTCCCGAAGCTCGAATAAACGTTCGACGCCGCCGAAAACGCCGAACCAGTACATATGCATGTACTGCACCAAAGAGGTTCCCAGCATGGAAGCATTGCAACAGCATTTCCAGACCAAACACTCCGCGATCGTGAACGGCAAACCACCGGACGACGTGTTCTCGGCCATACCGTCGGCGACCGCGTTCCCGTGGCTCAACTTCGCCGACACGCCCGCTCTGACCCTGCCACCATACTCATGCCGGCTGTGCATGAGCCAGTTTCCGTCCGTGACTTCGCTCCAGAAACACTTTACCACTGCTCACTACCTGAACTCCGTCCTTAACAACAACATCCagagcagcaacaacaacaacaacaacaacaacaacaacaacaacaataccaAAACCAGCAACAATAACACCAACAATGGTGGTAAAAGCGTCGGCAGCCCAATGCCGCTGTTCAATTGGCCGGTAATCACTTCGAACGGATACCATCATCACTCGACGTCCGGTGGCGGTTTCCTGGCCGACGACAACGTGCAGACCGGGCCCACCGACTTGTCCGTGTCCTCGTCCAAGCACAGCGGTGGCGGTGGTAAGCATCACTCCTCGTCGGGCAAGCATAAGTCGACAGCGGACGATGAGCGGAACCACGCGAGTAGCAAGAAGTCCCGTTCGTCGCCCGGCCGCGAACCTGTGCCGCAACACCCGGCCGACGCGCGCACGGCTAAACTAGATCGGACAGGCGGTCACGGCTATAACGCGTACGAAAGCAAACACCAGCAGTACCAGCAGGACCAGCAGCAGCAACAATTGCAGTCGGCCACGCGAACGGCCGCGCACGTGGCCAGCTTCAACAGCAAAATCCAACTGCCGTGCCCTCACTGCCACCTGACGTTCGTGCATTTCGAAGACTACCAGCAGCACGTCATCGGTCACTTCCTGATGGCCGCCGCCGAGTACGCGTGCCAAGAGTGTTCCACGTCGTTCGCCACCTCTGAGCACGTGCAGAAACACCTGATGGAGACGCACGCGCAAAATTTCTACCGGTGTATGCTGTGCAAAGAGGTGTTCCCGACCAAGTCCGCGCTCAAGGTGCACTTCAGCATGAACCACGGCAGCGAGCACCGGATGTTCCGATGCAACAACTGCACCGGGCTGTCCAGGCCACTGTTCCAGACGGAGATCGAGTTCATCGACCATCTGAGGAACACCCATtactcggcgcggtcgccgccaCCGCCTGCGCCGCCACCGGTCCAGACCAACCTGATGCTCAGATGCTTAGTATGCCACGCCACGTTCAACACGCAATCCGATATGGAGCAACATTTAGCTAGTCATTCCAAACAATTCCAATGCCAGTTTTGTTCCGAGGCGTTCCACATCGAGTTCCTGTTGGACAGGCACATACAGACGCATCATAGTTCCGCGATTTTAAATCATCTCAACCGGAATCATAGGGAATCTCCGAGCTCCATGAGCACGTCGCCCACGTTCATGTCCCGGTCACTCGACGGTGATAAGCACGCTATGGAAAACGGGACGAACGCTTGCGACTTATGCGAGAAAAACGATTTTCGAAACGAGTTAGACTTGATGACGCACAAGAAAACGATGCATCAGGCGAAGCCCACCAATCTTACGACTAAAGTGAGCCTGCATTGTGCGTATTGCAACGAAAACTGCAAATCGAGAACGGAGCTGGAGAACCACATGAAGACCCATTCACAGCACGGTTCGAACGCCGGAGGAAAACACAAGTGTAACATTTGTGATGAGATCTATCAGTCCGCCATCAGCCTGGCCGAACATAAGCTCACACATTgcaagGTGGCCACGAGTACCGTCTGCAGTCACTGCAAAATGATCATCGATAATGAGGAACAGTTCTACCAACACCTCCAGAAGCACTGCAACCCGGTGAACGTGAACGGCGGCCAAGTGACGTTCCCCACGTCATGCATCATATGCAGACAAACTCTGGTCTCGGACATCGAAGTTAAGGTGCACGTGCACTATCATCTGTCCCGAGTCAAGGAACCACCGGCCGTGTGCGGGAACTGCAACAGGTACAAACCGTCCGCGTCGTCGCCATGCACCGGTTGCAACCGGACCAGGAACAGTGCTACGGAACGGTGTCCCGACTGTGGCACGACGTTCGAAACTTTTGGCTCGTTGCAACACCATCTGACGACCGTCCACAGAAAGCCGTTTCACTGTTTCAAATGCAAGATCGGGTTCGAGTCGCAACAAGAAGCCACGATCCACCTGGGCACGCACCTGGCCACGTTGAACGGCTCCGTGGACGGAATCGAGTGCGGCCTATGCCCGTGCGTGCTGCCAACGGCCAACGGTCTCCAGGTGCACCTGATCGAGCACACGTTCGCCGGCTGCAAGGCATACACTTGTTACTTGTGCTCGGCGATATTCACCGCACCCACTGGTCTTCAGGCGCACATGACCGTCGATCATTCCAACGAAACGCCGCCGTACGACTGCCCTAGGTCTAATTGTCCAGCCAAGTTTTTCTTCACTGCCGAGCTTGACCGGCACACGCTGGAACACCAAGGACAAGACGTGCTCGCAAACATGAACTTCTACAAGTACCAGAACAAACTGATGTCCGTCTGCGAAAATATGTCGTTCAAGTGCGCGGAATGCTACCAGAGTTTCCTGACGCAGTCCGACCTGCAGTGTCATATGTACGACCGACACCAGCAAAAGCACGCGACGACCGAAGTCAAGGACGTGAAACAGGAAGAGATGACCGGTGGCGACGAAGTGAACGTTGGTGGTGGCGCTGATAAGGCCGGTGAAAAAGGCATCGAGAAACCGATCAAGAAGGAAAGCCTGCAGGACGAAGTTAACGTGAAGACGGAACACCTCGAAAAGGACGACGGCGACGAGCGCCAAGTGAACAACGACTGTGGTACTAACGTCGAAAATTCCGGCGAGGACGACAACGAGGACGAGGATGAAGATGAAGAACTGATCGACGTAGGAGTGAACAACCGTGTTGATGAGAAGCCGCGGGCAGACGACGCGGACGCTCATTGA
Protein Sequence: MSSRARLGDPVRERSPTRPSDRTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSNKRSTPPKTPNQYICMYCTKEVPSMEALQQHFQTKHSAIVNGKPPDDVFSAIPSATAFPWLNFADTPALTLPPYSCRLCMSQFPSVTSLQKHFTTAHYLNSVLNNNIQSSNNNNNNNNNNNNNTKTSNNNTNNGGKSVGSPMPLFNWPVITSNGYHHHSTSGGGFLADDNVQTGPTDLSVSSSKHSGGGGKHHSSSGKHKSTADDERNHASSKKSRSSPGREPVPQHPADARTAKLDRTGGHGYNAYESKHQQYQQDQQQQQLQSATRTAAHVASFNSKIQLPCPHCHLTFVHFEDYQQHVIGHFLMAAAEYACQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNTHYSARSPPPPAPPPVQTNLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSAILNHLNRNHRESPSSMSTSPTFMSRSLDGDKHAMENGTNACDLCEKNDFRNELDLMTHKKTMHQAKPTNLTTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNAGGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEEQFYQHLQKHCNPVNVNGGQVTFPTSCIICRQTLVSDIEVKVHVHYHLSRVKEPPAVCGNCNRYKPSASSPCTGCNRTRNSATERCPDCGTTFETFGSLQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANGLQVHLIEHTFAGCKAYTCYLCSAIFTAPTGLQAHMTVDHSNETPPYDCPRSNCPAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSVCENMSFKCAECYQSFLTQSDLQCHMYDRHQQKHATTEVKDVKQEEMTGGDEVNVGGGADKAGEKGIEKPIKKESLQDEVNVKTEHLEKDDGDERQVNNDCGTNVENSGEDDNEDEDEDEELIDVGVNNRVDEKPRADDADAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136337;
90% Identity: iTF_01346628;
80% Identity: -