Sflv005176.1
Basic Information
- Insect
- Sipha flava
- Gene Symbol
- L
- Assembly
- GCA_003268045.1
- Location
- NW:1323019-1488814[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.1e-06 0.00018 21.3 1.2 1 23 172 194 172 194 0.98 2 22 1.1 97 3.2 7.0 1 23 200 222 200 222 0.97 3 22 4.6e-07 4e-05 23.3 5.6 1 23 228 250 228 250 0.99 4 22 5.7e-06 0.0005 19.9 0.9 1 23 256 278 256 279 0.96 5 22 8.6e-05 0.0075 16.2 2.0 1 23 296 318 296 319 0.96 6 22 0.02 1.7 8.8 0.4 1 23 344 367 344 367 0.97 7 22 2 1.7e+02 2.5 1.0 1 23 405 428 405 428 0.94 8 22 0.0031 0.27 11.3 2.3 2 23 608 629 607 629 0.94 9 22 0.00013 0.011 15.6 1.0 1 23 637 660 637 660 0.95 10 22 0.00011 0.0092 15.9 0.6 1 23 665 688 665 688 0.95 11 22 0.00042 0.037 14.0 0.8 2 23 743 764 742 764 0.96 12 22 0.053 4.6 7.4 3.6 1 23 768 790 768 791 0.96 13 22 1.5 1.3e+02 2.8 0.2 3 23 835 857 834 857 0.81 14 22 0.00077 0.067 13.2 4.6 2 23 872 893 871 893 0.96 15 22 0.0017 0.15 12.1 0.3 1 23 903 925 903 925 0.98 16 22 0.23 20 5.4 1.5 2 23 933 954 932 954 0.97 17 22 2.4e-05 0.0021 17.9 0.9 2 23 1029 1051 1029 1051 0.97 18 22 0.088 7.7 6.7 1.3 1 23 1055 1077 1055 1077 0.97 19 22 0.12 10 6.3 0.0 2 23 1089 1110 1088 1110 0.95 20 22 0.004 0.35 11.0 0.0 1 23 1118 1141 1118 1141 0.97 21 22 0.36 31 4.8 0.1 1 23 1148 1172 1148 1172 0.94 22 22 1.2 1e+02 3.2 2.7 1 20 1199 1218 1199 1222 0.87
Sequence Information
- Coding Sequence
- ATGTCCAGGAGGAAACAGGCCACGCCGCGTTCGCTCAGACATGGAAATCCTGACGCAGAAGACGTATTTGATGATGAAGACATTATGCCGCCACTATCTCCTACAGGATCTGGAAGTACGAAGAGCGACGACGACGAAGGGGACGAAGATGAGGACGAGGAGGAGTGCATCGTGGACGACGATCTGTCGGCGAGTTTTACCGAGGATTCGAACCACAGTCTGTTCTCAGAGGCGCTGAGTGGCGCGGGCGAGGTGAGCACCGAAGAGGCGGCCTCGTCGTGGAGCTCGGCCGTGTCGGAAGACCACACTTCGCCGGACAGCTGCACCACAAGCAACAGCCGGCCCGGTTCCACGGTTGAACACCACCGCGACAatcaccaccaccgccaccaccatCCCCGTCACCACAGCCGTCCGTCGTCGTACGCCACGGCCACGGTTGCCGCCGCAGCCGCCGCCGCAGCAGCCGCGACCGCCGCCGCAGCAGCAGCCAACTCCAACGAGGCCAACCCGTACGCATGCCAATACTGCGACAAGACGTTTCCCCGGGGCAGTTACCTGAAGAAACACGAACAGACTCATGGAGAATCAATGCCTTTCAAATGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTGCACACGGGGGACAAGAAATACAAGTGTACTCAGTGCGACCATGCTTTTTCAAGGAGTGATCACTTGAAGATTCACATGAAAACGCATGACAATCAAAAACCGTTCCAGTGCACGGTATGCAACAGAGGTTACAGCACGGCGGCCGCGCTCACGTCGCATATGCAAAACCATCACAAACGGGCAGCCGAACGGGCAAACTCGCCGCAGATCTCCGGTCCATCGTACAAGTGTCTACAGTGCACTCAGATATTCCGCAAGCCCGACGAGTTGCAGAACCACACGGCGACGCATCATCTGGGCGAACAACTGTCGTCGAATTCCCGGAGCTCGAATAAACGTTCGACGCCGCCGAAAACGCCGAACCAGTACATATGCATGTACTGTACCAAAGAGGTGCCTAGCATGGAAGCACTGCAACAACATTTCCAGACCAAGCACTCCGCAATCGTGAACGGCAAACCACCGGACGACGTGTTCTCAAATATCCCGTCGGCGGCCGCGTTTCCGTGGCTCAACTTTGCCGACACGCCCGCCCTGACCCTGCCGCCGTATTCGTGCCGGCTGTGCATGAGCCAGTTTCCGTCCGTGACTTCGCTCCAGAAACACTTTACCACTGCTCACTACCTGAACTCCGTCCTCAACAACAACATCCagagcagcaacaacaacaacaacaacaacaccaAAACTAGCAACAATAACACGAACAGCGGCGGTAAAAGTGTCGGCAGCCCGATGCCGCTGTTCAATTGGCCGGCAATCGCTTCGAACGGATACCATCATCATCACTCGGCGTCCGGCGGCGGTTTCTTACCCGACGAGAACGTGCAGACCGGGCCCACCGACTTGTCCGTGTCCTCGTCCAAGCACAGCGGTGGCGGTGGTAAGCATCATTCTTCGTCAGGCAAGCACAAGTCGACGACGGACGATGATCGGACCCACGCGAGCAGCAAAAAGTCCCGTTCGTCGCCCGGCCGTGAACCTGTACCACAACACCTGTCCGACGCACGCCCGACAAAACCAGAACGGACCGGGAGTAGCCACGGGTATAACGCGTACGAAGGCAAACACCAGCACTACCAGCAGGACCAGCAGCAGTTGCAGTCGGCTGCGCGATCGGCCGCGCTCGTGGCCAGCTCCAACAACAAGATCCAACTGCCGTGTCCTCACTGCCACCTGACGTTCGTGCACTTCGAAGACTACCAGCAGCACGTCATCGGTCACTTCCTGATGGCCGCCGCCGAGTACGCGTGTCAGGAGTGTTCCACGTCGTTCGCCACCTCCGAGCACGTGCAGAAGCACCTGATGGAGACGCACGCGCAAAACTTCTACCGGTGCATGTTGTGCAAAGAGGTGTTCCCCACCAAGTCCGCTCTCAAGGTGCATTTCAGCATGAACCACGGTAGCGAGCACCGGATGTTCCGGTGCAACAACTGTACCGGGCTGTCCAGGCCGCTGTTTCAGACGGAGATCGAGTTCATCGACCATCTGAGGAACACCCATTACTCGGCAAGATCGCCGCCACCGCCGGCGCCACCACCAGTCCAGACCAACCTAATGCTCAGGTGCTTAGTATGTCACGCCACGTTTAACACGCAATCCGACATGGAACAACATTTAGCTAGTCATTCCAAACAGTTCCAATGCCAGTTTTGTTCCGAGGCGTTCCACATCGAGTTCTTGTTGGACAGGCACATACAGACGCATCACAGTTCCGTGATTTTGAATCATCTCAACCGGAATCGTAGGGAATCTCCGAACTCCGTGTGCACATCACCCACGTTCATGTCCCGATCGGTCGACGGTGGTAAGCATGTGATGGAAAACGGGACGACCGCTTGCGACCTGTGCGAGAAAAACGATTTCCGAAATGAGTTAGACTTGATTGCGCACAAAAGAACGATGCATCAGGCATCGAAGCTCACCAATCTTTCGACAAAAGTGAGTTTGCATTGCGCGTATTGCAACGAGAACTGCAAATCGAGAACGGAGCTGGAAAATCATATGAAAACCCATTCGCAGCACGGTTCGAACGTCGGAAAACACAAGTGTAACATTTGTGACGAGATCTACCAATCCGCGATCAGCCTGGCCGAACACAAACTCACGCATTGCAAGGTGGCCACAAGCACCGTATGCAGTCACTGCAAAATGATCATTGACAACGAGGAACAGTTCTACCAGCATCTCCAGAAGCACTGCAACCCGGTGAACGTGAACGGTGGCCATGTGACGTTCCCCACGTCATGCATCATTTGCAGACAGACTCTGGTCTCGGACATCGAAGTCAAGGTGCACGTGCACTACCATCTGTCCCGGGTCAAAGAACCGCCGGCCGTGTGCGGGAACTGCAACCGGTACAAGTCGTCCGCGTCATCGCCGTGCACCGGTTGCAGCCGGTCTAGGAACAACGCCACGGAACGATGTCCTGACTGTGGCACGATGTTCGAGACTTTCGGCTCGTTACAGCATCATCTGACGACCGTCCACAGAAAACCGTTTCACTGTTTCAAATGCAAGATCGGGTTCGAGTCGCAACAAGAAGCCACGATCCACCTGGGCACGCACCTGGCCACGTTAAACGGCTCCGTGGACGGCATCGAATGTGGCCTGTGCCCGTGCGTGTTGCCTACGGCCAACGGTCTCCAGACGCACCTGATCGAGCACACGTTCGCCGGCTGCAAGGCGTACACTTGCTACCTGTGCTCGGCGATATTCACGGCGCCCACCGGCCTCCAGGCGCACATGACGGTCGACCATTCCAACGAGACGCCGCCGTACGACTGTCCCAGGCCGAATTGTCCGGCCAAGTTTTTCTTCACCGCTGAGCTCGACCGACACACGCTGGAACACCAGGGACAAGACGTGCTCGCAAACATGAACTTCTACAAGTACCAGAACAAGCTAATGTCCGTCTGCGAGAGTATGTCGTTCAAATGCGCGGAATGCTACCAGAGCTTCCTGACGCAGTCCGACCTGCAGTGCCATGTGTACGACCGGCACCAGCAAAAGGACGCGACGACCGAAGTCAAAGACGTGAAACTGGAAGAGACGACCGGTGGTGATGAGGTGAATGGTGGTAGTGTTGGTGGTGTGGATAAGGCCGGTGGTAAGGTCGTCGAGAAACCGATCAAGAAAGAGAGCGTGCAGGACGAGGTAAACGTGAAGACGGAACATCTCGAAAAGGATGACGGTGACGAGCATGAAATTAACAACGACAGTGTCACTAGCGTCAAAAATGCGGGCGAGGACGACGACGAGGACGAGGACGAAGAACTGATCGATGTGGGAGAGAACAACCGTGTCGACGAGAAGCCGCAGGCGGACGACGCGGACGCTCATTGA
- Protein Sequence
- MSRRKQATPRSLRHGNPDAEDVFDDEDIMPPLSPTGSGSTKSDDDEGDEDEDEEECIVDDDLSASFTEDSNHSLFSEALSGAGEVSTEEAASSWSSAVSEDHTSPDSCTTSNSRPGSTVEHHRDNHHHRHHHPRHHSRPSSYATATVAAAAAAAAAATAAAAAANSNEANPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSNKRSTPPKTPNQYICMYCTKEVPSMEALQQHFQTKHSAIVNGKPPDDVFSNIPSAAAFPWLNFADTPALTLPPYSCRLCMSQFPSVTSLQKHFTTAHYLNSVLNNNIQSSNNNNNNNTKTSNNNTNSGGKSVGSPMPLFNWPAIASNGYHHHHSASGGGFLPDENVQTGPTDLSVSSSKHSGGGGKHHSSSGKHKSTTDDDRTHASSKKSRSSPGREPVPQHLSDARPTKPERTGSSHGYNAYEGKHQHYQQDQQQLQSAARSAALVASSNNKIQLPCPHCHLTFVHFEDYQQHVIGHFLMAAAEYACQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNTHYSARSPPPPAPPPVQTNLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSVILNHLNRNRRESPNSVCTSPTFMSRSVDGGKHVMENGTTACDLCEKNDFRNELDLIAHKRTMHQASKLTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEEQFYQHLQKHCNPVNVNGGHVTFPTSCIICRQTLVSDIEVKVHVHYHLSRVKEPPAVCGNCNRYKSSASSPCTGCSRSRNNATERCPDCGTMFETFGSLQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANGLQTHLIEHTFAGCKAYTCYLCSAIFTAPTGLQAHMTVDHSNETPPYDCPRPNCPAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSVCESMSFKCAECYQSFLTQSDLQCHVYDRHQQKDATTEVKDVKLEETTGGDEVNGGSVGGVDKAGGKVVEKPIKKESVQDEVNVKTEHLEKDDGDEHEINNDSVTSVKNAGEDDDEDEDEELIDVGENNRVDEKPQADDADAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136337;
- 90% Identity
- iTF_01347466;
- 80% Identity
- -