Smay012262.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- -
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000744.1:170387-178048[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-12 3.8e-08 34.0 0.0 10 72 157 226 151 228 0.88 2 3 0.0084 1.8e+02 3.0 0.0 22 70 347 391 341 397 0.75 3 3 0.91 1.9e+04 -3.5 0.0 7 62 764 785 762 790 0.49
Sequence Information
- Coding Sequence
- atgaaaaaattagatGCAGGAAAATCTTCTAAATTAAAAGAATCTAAAAATCTTTTAGAATCTGAAGAAAATTTTGCTGGATTTGATGTAAATGATGAAGCATTGATTCGTATTGAATATAGTAAACAATctGTTAAAAAAGAACTTTATAAAGAAAAAGGTATACCTATGGAAGATGATGAAGTAAGCAGTCCTATTGTCAATAACAATCAtgttaataataagaaaaaacattCCAAGttaaatgtatcttCACCCGAAGAAAATGATACAAAATATGGTCGAAGTTctaataaaagaattaaaaaagataatgtaCGCACTGAAACAATAGAATCTTTGGAGTCCAATGTCTCGCCAAATTTGGaacttaCAACTCCAACATTCAACCTTACTTCTACATCTAAAACCCGTCGCAGTACTGGTagaaaacaaaatgttgatattaatgATCCAATTTTTAAACTTCCTTTTAAATTTGgatgGAAGCGGGAATTAGTGTATAGAACTACTGGTGATTCTACATCTATTAATCGAGCTAATAGAAATGGTGATGTTTATTACTATTCTCCGATTAATCGAAAACTTCGATCATTAAGAGAAATTCAAGAACAATTAGACTTATCACTGGATGAACATAATCCATTAACTATagaaagttttacatttttaaaacaacctaTTGGCATAAATGATCGAACTAAGGAACTTATAAGAGATGCTAATACTAAATTatctaaagaaGATTCATTTGTTGGTGTTGCTGTTAAACCTAAAAAAGCTAAAACACCTGTACGGCCTTTTGATTATGAGTTGTCAGATAATGAGAATAACAAGTCTGcaagtaaaatgaaaattctttttaaaaatgtcaagacatcaaaatcaaaatctaaaaaaaataataGTCATTTAGAAGAGTCTTCATCTACACCAGAATATATAGCTGAAGATTGGCAAGCAATTCAATCTAGTGTAACACCTAAAGTCTCCTCACCAAAAACTGATGTTGAAGTAAATGTTGAGCATATTAAAAGAcgGTTGTCAACATCAGATGGAGAAGTTATTATGCAGGCCCCATGTGGGATACGTTGTCCCAACAGCAATGAACCTGCTACTTTAATGTGTGCCCAATGTCTGGTCTATTATCATCCAGCTTGTGTCAATTTAAATGCTAGTCTAAAAATTGTTGGTTATGTATGCATAAATTGTCGATCCTATACACGTCAAAACATTAGGCGAGGTGAGACATCTCATACTTTAGTTATTGATGCTCCTGAAATTGAACAATTACGTGTTGAACCAATTCGTATACGACAAGTTCATCAAGCATCAGATGcacctaatttttttattgatagaaCACCTATTATAAAATCTGATGAATCCAATTATGAAAGTGATGATGAACATAGTGAAGAAaataattctgttttaaaaacaGTAATATGTCAAGGAAATGTCGTTGAAACAGCTATGGTCGATGGAATTCTTCATGAACAATATGtttatgaaatgaaacaaaCCCGAGGACCTAGTTTGATGACCTGTGTTGTTCAAGAGCCTAAATATTTAGATGaaaatccTGATATTATTAATGGTTCACTCCAAGAAAAgcctcatatattatttatggaatCATTCAATCATATGGTAAAAGCGATGAGATATGTTTTTAGTCATTTAAAAGTGCAAGAACTGTTATCAGCTTCACGAGTGTGTACTGCTTGGCATATAATTGCAATGAATAGATTTTTAtGGCAGAATGTTCGTTTGAAGAATTCTATGGTTTATGACTGGAATAAATTTGTTGACACTATTAATAATCAAGGTACAGTTTCATTGGACTCTCGACGTATGTTAATGCCTACTAAGGTtgaagaatttgaaaatttttggtTGCGGTTTTCAATAGCTATTAAAAGagctacaaaattaaaaacaattgagtTATATAGATGTCCAACCCATGTAGTTgaagatataatttattcattacccCAACTTAGTGTACTTAATGCTACATCATTAAAAAATCCAAATCCTCCCAAAGATTCAAAAAATCCTAATGAATTGATGACTTTAAATTTGGGATATTTAGGACAAATGACAAACCTTACTGAACTAAGGCTAAAAACTCCTTTTGGATTAAAGTTGTCAGTTCTTCCGTCATTTgagaaattatcaaatttaaaaactttagcATTAACTTCTATTAAATCATTCCCTGTAGATTGGTGTAGTAGTATGGATTCTGTTTCAACAGGCTTAGAGTTTTTAGAGATTGGTGACTGTAGTTCTTTAACCAAAGATTTTGCCAGAGTACTAAAGAGATTTACCAATTTAACTTCATTGAGATTAGAAAATTGTGTTGGTAAATGGGACCATTTTGCACAAgatgtttttattgtaattagaaATCTTGAAAAACTGAGGATTTTGGAATTGATTAATATAGAATTCAGTAACAGCGTAGAAGATGAATTAgagaaatgttttaatattaaagcttTATTGATTATTCCTGCTTATGTGAGCCaatctgCAACTACAAACTGTCATGTTATTGATTGTCTCAAAAAGCTCTCTACAACACTAACTCATCTTGTTTGGGGATTAACACATGAGTTGCTCCGAGTTACTGACACATTTATTGCTCAATATCAACAAAATCAGCATTCTATTGGCTACAATTTAGAATTATCACACACTAATGAACCTGGCAAtaactatatacctatattaagaACAAGAAAACCGAGACTACGCCCTGATGAAGAACCTGTTGCCGAATTAGAAAAAGATAAAGATTCATCAGAGAATAACGTGGATATACTTTCTGTTTCAGctcttgaaaaattattagaaaccaTGATGATTGGTGCTAAgactaaagtaattaaaattccTTTTAAAGGGACGACTCGAGTTAATTTAGCTGAACAGTTTAATGATCTTTAG
- Protein Sequence
- MKKLDAGKSSKLKESKNLLESEENFAGFDVNDEALIRIEYSKQSVKKELYKEKGIPMEDDEVSSPIVNNNHVNNKKKHSKLNVSSPEENDTKYGRSSNKRIKKDNVRTETIESLESNVSPNLELTTPTFNLTSTSKTRRSTGRKQNVDINDPIFKLPFKFGWKRELVYRTTGDSTSINRANRNGDVYYYSPINRKLRSLREIQEQLDLSLDEHNPLTIESFTFLKQPIGINDRTKELIRDANTKLSKEDSFVGVAVKPKKAKTPVRPFDYELSDNENNKSASKMKILFKNVKTSKSKSKKNNSHLEESSSTPEYIAEDWQAIQSSVTPKVSSPKTDVEVNVEHIKRRLSTSDGEVIMQAPCGIRCPNSNEPATLMCAQCLVYYHPACVNLNASLKIVGYVCINCRSYTRQNIRRGETSHTLVIDAPEIEQLRVEPIRIRQVHQASDAPNFFIDRTPIIKSDESNYESDDEHSEENNSVLKTVICQGNVVETAMVDGILHEQYVYEMKQTRGPSLMTCVVQEPKYLDENPDIINGSLQEKPHILFMESFNHMVKAMRYVFSHLKVQELLSASRVCTAWHIIAMNRFLWQNVRLKNSMVYDWNKFVDTINNQGTVSLDSRRMLMPTKVEEFENFWLRFSIAIKRATKLKTIELYRCPTHVVEDIIYSLPQLSVLNATSLKNPNPPKDSKNPNELMTLNLGYLGQMTNLTELRLKTPFGLKLSVLPSFEKLSNLKTLALTSIKSFPVDWCSSMDSVSTGLEFLEIGDCSSLTKDFARVLKRFTNLTSLRLENCVGKWDHFAQDVFIVIRNLEKLRILELINIEFSNSVEDELEKCFNIKALLIIPAYVSQSATTNCHVIDCLKKLSTTLTHLVWGLTHELLRVTDTFIAQYQQNQHSIGYNLELSHTNEPGNNYIPILRTRKPRLRPDEEPVAELEKDKDSSENNVDILSVSALEKLLETMMIGAKTKVIKIPFKGTTRVNLAEQFNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01346453;
- 90% Identity
- -
- 80% Identity
- -