Sflv003668.1
Basic Information
- Insect
- Sipha flava
- Gene Symbol
- -
- Assembly
- GCA_003268045.1
- Location
- NW:807212-815497[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9e-14 4.9e-10 38.4 0.0 9 72 156 226 151 229 0.91 2 3 0.012 1.6e+02 1.5 0.0 29 69 352 391 342 398 0.72 3 3 0.0095 1.2e+02 1.9 0.0 35 57 710 732 699 774 0.78
Sequence Information
- Coding Sequence
- atgaaaaaattagacGTCGGGAAATCTTCTAAATTAAAAgaatctaataatattttagaatcggAAGAAAATTTTGCTGGATTTGATGTAAATGATGCAACATTAATTCgtattgaaaatagtaaacaatctgttaaaaaagaactttaTAAAGAAAAAGGTATACCTATGGAAGATGATGAAGTAAGCAGTCCTATTGTCAATAACAATCATTTtagtaataagaaaaaacaCTCCCAAtcaaatgtatcttCACCAGAAACAAGTGATACAAAATATGGTCGATGTTctaataaaagaattaaaaaagataatgtACGCACCGAAACAATAGAATCATCGGAATCTGATGTTCCATCAAATTTGGaaCTTACAACTCCAACATTCAACCTTACTTCTACATCTAAAACCCGTCGTAGTACTGGTCGAAAACAGAATGTTGATATTAGTGATCCAATTTTTAAACTTCCTTTTGAATATggatgGAAGCGAGAATTAGTGTATAGAAATACTGGTGATTCTTCATCTATTAATAGAGCTAATAGAAGTGGTGATGTTTATTACTATTCTCCAATTAATCGAAAGCTTCGGTCATTAAGAGAAATTCAAGAACAATTGGATTCAACACTGACTGATGAAAATCCGTTAACTATagaaagttttacatttttaaaacagccTATTGGCATGAATGACCGAACAAAGGAACTTATTAGGGATGCCAATACTAAATTAtctaaagAAGATTCATTTGTCGGTGTTGCTGTTAAacctaaaaaagtaaaaacaccTGTACGGCCTTTTGATTATGAACTGTCggataatgaaaataacaagtctgcaagtaaaatgaaaattgtttttaaaaatgtcaagatGTCGAAATCCAAATCTAAAAaagataataGCAATGTAGAAGAGCCTTCATCTACACCAGAATATATAGCTGAAGATTGGCAAGCTATTCAATCTAGTGTAACACCTAAAGTATCATCGCCAAAAACTGATGATGCTGAAGTAAATGTTGACCATATTAAAAGAcgGTTGTCAACATCAGATGGAGAAGTTATTATGCAGGCCCCGTGTGGGATACGTTGTCCCAACAGCCATGAACCTGCTACTTTAATGTGTGCCCAATGTTTGGTCTATTATCATCCAGCTTGTGTCAATTTAAATGCTAGTCTAAAAATTGTTGGTTATGTATGCATAAATTGTCGATCCTatgtacgtaataaaaataagcgAGTTGAGTCATCTCATTCTGTAGTTGGTGTTCCTGAAATAGAACAATTACGTGTTGAACCAATTCGTATACGACAAGTTCATCAGACATCAGACAgacctaatttttttattgatagaaCACCTATTATGAAATCTGATGAATCCAATTACGAAAGTGATGATGAACGTAGTGATGAAAATAACTCTGTTTTAAAAACGATAATGTGTCAAGGAAATGTCATTGAAACAGCTATGGTCGATGGAATTTTTCATGAACAATATGTTTATGAAATGAAACAAACCCGAGGACCTAGTTTGATGACCTGTGTTGTTCAAGAGCCTAAATATTTAGATGaaaaccCTGAAATGAATGGTTCACTTAAAGAAATGCCTTCTCATATGGCATTCATGGAATCATTCAATCACATGGTAAAAGCGATGAGATATGTTTTTAGTCATTTAAAAGTGCAAGAACTGTTATCAGCTTCCCGAGTATGTACTGCTTGGCATATAATTGCAATGAATAGACTTTTAtGGCAAAATGTTCGTTTAAAGAATTCTATGGTTTATGATTGGAATAAATTTgttgaaactattaataatcaAGGTACAGTTTCATTGGACTCTCGACGTATGTTAATGCCTTCTAAAGTTGATGAATTTGAGAATTTTTGGCTGCGATTTTCAATAGCTATTAAAAAagctacaaaattaaaaacaattgaattatATAGATGTCCAACCCATGTAGTCGAAGATATCATTTATTCATTACCCCAACTTAGTGTACTTAATGCTACATCATTAAAaaatccAAATCCTAAAGATTCAAAAAATTCTAATGAAATTATGACTTTGAATTTGGGATATTTAGGACAACTGACAAACCTTACTGAACTAAGGCTAAAAAGTCCATGTGGATTAAAGTTATCAGTTCTTCCatcatttgataaattaataaatttaaaaactttagcATTAACCTCTATTAAATCATTCCCTGTCGATTGGTCTAGTAGTATGGAATCTATCTCAACAGGTTTAGAGTTTTTGGAGATTGGTGACTGCAGTTTTTTATCCAAAGATTTTGCAAGACTACTAAAAAGATTTAACAATTTAACTTCCTTGAGATTAGAAAATTGTGTTGGTAAATGGGAAAATTTTGCACAagatgtttttattgtaatcagAAATCTTGAAAAACTGAGGATTTTGGAATTGATAAATATAGAATTCAGTAGCAGTGTTGAAGATGAATTAGAGAAATGTTTTGGTATTAAAGCTTTATTGATTATTCCTGCTTATGTGAGCCaatctgCAACAACCAACTGTCACGTTATTGATTGTCTCAAAAAACTCTCTAAAACATTAACCCATCTTGTTTGGGGATTAACTCATGAGTTGCTCCGTGTAACTGACACATTTATTGCTCAATATCAACAAAATCAGCATTCTATTGGCTACAATTTAGAATTATCACATACTAAAGAACCTGGCAATAACCATATACCTATATTGCGAACAAGGAAACCGAGACTACGTCCCGGTGAAGAACCTGTTgccgaaaaagaaaaagataaagACACAGCAGATAATAACGTTGATATACTTTCTGTTTCAGctcttgaaaaattattagaaactaTGATGCTTGGTGCTAAAactaaagtaattaaaattccTTTTAAAGGGACGACTCGAGTTAATTTAGCTGAACAGTTTAATGATCTTTAA
- Protein Sequence
- MKKLDVGKSSKLKESNNILESEENFAGFDVNDATLIRIENSKQSVKKELYKEKGIPMEDDEVSSPIVNNNHFSNKKKHSQSNVSSPETSDTKYGRCSNKRIKKDNVRTETIESSESDVPSNLELTTPTFNLTSTSKTRRSTGRKQNVDISDPIFKLPFEYGWKRELVYRNTGDSSSINRANRSGDVYYYSPINRKLRSLREIQEQLDSTLTDENPLTIESFTFLKQPIGMNDRTKELIRDANTKLSKEDSFVGVAVKPKKVKTPVRPFDYELSDNENNKSASKMKIVFKNVKMSKSKSKKDNSNVEEPSSTPEYIAEDWQAIQSSVTPKVSSPKTDDAEVNVDHIKRRLSTSDGEVIMQAPCGIRCPNSHEPATLMCAQCLVYYHPACVNLNASLKIVGYVCINCRSYVRNKNKRVESSHSVVGVPEIEQLRVEPIRIRQVHQTSDRPNFFIDRTPIMKSDESNYESDDERSDENNSVLKTIMCQGNVIETAMVDGIFHEQYVYEMKQTRGPSLMTCVVQEPKYLDENPEMNGSLKEMPSHMAFMESFNHMVKAMRYVFSHLKVQELLSASRVCTAWHIIAMNRLLWQNVRLKNSMVYDWNKFVETINNQGTVSLDSRRMLMPSKVDEFENFWLRFSIAIKKATKLKTIELYRCPTHVVEDIIYSLPQLSVLNATSLKNPNPKDSKNSNEIMTLNLGYLGQLTNLTELRLKSPCGLKLSVLPSFDKLINLKTLALTSIKSFPVDWSSSMESISTGLEFLEIGDCSFLSKDFARLLKRFNNLTSLRLENCVGKWENFAQDVFIVIRNLEKLRILELINIEFSSSVEDELEKCFGIKALLIIPAYVSQSATTNCHVIDCLKKLSKTLTHLVWGLTHELLRVTDTFIAQYQQNQHSIGYNLELSHTKEPGNNHIPILRTRKPRLRPGEEPVAEKEKDKDTADNNVDILSVSALEKLLETMMLGAKTKVIKIPFKGTTRVNLAEQFNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01347102;
- 90% Identity
- -
- 80% Identity
- -