Smay001327.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sipha maydis
Gene Symbol
TFIP11
Assembly
GCA_034509805.1
Location
JASXSY010000072.1:393383-398734[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.6e-77 5.6e-73 247.1 17.9 3 275 387 653 386 653 0.97
2 2 0.26 5.4e+03 -2.1 0.1 234 260 657 683 654 695 0.65

Sequence Information

Coding Sequence
atgtcagACGATGAAATGGAAAAGTTTGAAATCACTGACTATGACTTGGATAATGAATTCAATATGAATAGACCTCAGAGGCGGTTGACCAAAAATCAAGCAATTTatggaaTTTGGGCTGATGAAGAAGGTATTGGCGATAGTGATGACGAACCTTCAGGTTTTGGAGGCCgcagaaaaaaagataaaaaatataagcaaaacTACACGGCTCCTGTTTCATTTGTAGCTGGAGGTATTCAACAATCCGGtaaagataaaaaagaaaaagaaataaaagaaactaaaaatgatGAAACAGAAAATGTGGGAAATAATATATCTTCATCAAGtgaaGAAGACGAAAAACCAGCATTTAGTTTTGATATTGATCAAGAATTGGCAGGCTTACGAAAGAAACGGCCCCAAGTAAATTCTAGAATTATGAACAAAGGATTAGGAGATTGGGAAAAACATACTAAAGGAATTGGTGCAAAACTTTTACTcggaATGGGTTATCAACCTGGTCATGGATTAGGAAAAAAACTTCAAGGTATTACAGCTCCCATTGAAGCTAATTTAAGAAAAGGAAGAGGAGCAATAGgtGCATATGGACCTGAATCTAAAAGCAAGCCAATGAAAATAGATAATGAACGAATAACAGATAAAACTAAAGATAATAAAGTCCCAAAAAATGGATGGCGAAAAGCTCTGAAAACagaaaaaacacaatatatttataagacagCTGAAGAAGTAATTGAAGAAAGTAAACACCCGGGACAGAGAAAAAGAGAATTCAAtgaacTAAGCAGAGTTAAAGTGATTGATATGACTGGTCCTGAACAAAGGGTATTATCTGGGTATCATGCTATTTCTGGTGTTAAAAAACCTATGGATCAATGGGAAGTACAAAaggataaaaaattttcaaattttgatttaccagaattattacataatctcaatattttagttgaaataGCTGAACAAAACATTGTTACAAACAATCAAGAACTTTGTAATTGTGAAGATCGGCTAGTTATCATTGATCAGGAAACAATTAAATTAGGAGAAACtattaaagataaagataaatcCATTGAATCACTTGAAAAAGTAATAGTTATTATGGAATCTTTAAatgatgcattaaaaaaaaaactgttaaatagTAATGAAGCCATAAAACGTTTAACGGAAATGAaaGAAAATTATTATCCAGATTATCGACTTAATGGTGGGTCAGTTTTTGCACTGTCAATTTCACAAATTATGATGAAAGAAAAGCTGTCTACTTGGGACCCACTACAAGATCCAACAATGCCCTTTGATGAACTCAAAAAATGGAAAGAACTATTAACATTGGATGAGCCATGTGCTGTCGGATTTCAATCAAGTGCTGAATTCCAAACATTGATTTGGCAAGAGTGGGTACCTCAAGTTCAAAAAGCATGcggGCGATGGAACTGTCGAGATTGTAATAGCATGATAAAACTGGTTGAACAATCTGTTGAATTGATACCTAATGACATTATTACTAATGTCATTGAAAATATGATCTTACCAAAAATACAATTAGAAGTTGAGCGATGGGATCCATTGACTGATCTTATGCCAATACATTTATGGATTCATCCGTGGTTACCATATTTAAgcaaacattttgaaacgattGTCTATCCTACTCTGAGACAAAAACTAAGTGTAGCATTAAATGCCTGGCATCCGTCTGATAACTCAGCTAAACTGATGCTTCAACCTTGGATAAATGTTTTCCAGCAAGGCTATATGGAAGcctttctaattaaaaatattgttcctaAGTTACAAATTGCTTTACAATCTTTTGTAATCAATCCACATCATCAACAATTagacAATTGGAATTGGGTGAATGCGTGGTCAGATTTGTTGCCAGTACCCACACTAGTAGATTTGCTGGACCAACATTTCTTCCCAAAATGGCTTAAAACACTTACCATGTGGATAAATATGAACCCTAATCATGAACAAATAAGTAACTGGTATACAGGATGGAAGTCTTTAATGCCTGCTATTATTGTGGAACATCCAACAATTAAAGGACGATTTCATTCGGCATTAGATATTATGAGCCGAGCAGTTGGAGGACCTTCTATGCCATTACCACCTCCGCCGCCTACAATTCAAggTGGTTTAGCTGAAGCTGTGCGTACTGCGTCACAGATGCCTCATGGTTTCAAAGAATTAGTGCAAAAGCGCTGTGAAGAACGAGGTATTTTATGGATGCCGATTCCAAGTCGTTTTAGAGAAGCTAAACAAGTCTATCGATGTGGAGCAAGGCTTCAAGCATATATTGATCGTGGAGTTTTATTTGTCAGTCAAGATGGTACAAATTTTATTCCTATGTCTGTACAGTCCATGTTAGAATtgtgtgaataa
Protein Sequence
MSDDEMEKFEITDYDLDNEFNMNRPQRRLTKNQAIYGIWADEEGIGDSDDEPSGFGGRRKKDKKYKQNYTAPVSFVAGGIQQSGKDKKEKEIKETKNDETENVGNNISSSSEEDEKPAFSFDIDQELAGLRKKRPQVNSRIMNKGLGDWEKHTKGIGAKLLLGMGYQPGHGLGKKLQGITAPIEANLRKGRGAIGAYGPESKSKPMKIDNERITDKTKDNKVPKNGWRKALKTEKTQYIYKTAEEVIEESKHPGQRKREFNELSRVKVIDMTGPEQRVLSGYHAISGVKKPMDQWEVQKDKKFSNFDLPELLHNLNILVEIAEQNIVTNNQELCNCEDRLVIIDQETIKLGETIKDKDKSIESLEKVIVIMESLNDALKKKLLNSNEAIKRLTEMKENYYPDYRLNGGSVFALSISQIMMKEKLSTWDPLQDPTMPFDELKKWKELLTLDEPCAVGFQSSAEFQTLIWQEWVPQVQKACGRWNCRDCNSMIKLVEQSVELIPNDIITNVIENMILPKIQLEVERWDPLTDLMPIHLWIHPWLPYLSKHFETIVYPTLRQKLSVALNAWHPSDNSAKLMLQPWINVFQQGYMEAFLIKNIVPKLQIALQSFVINPHHQQLDNWNWVNAWSDLLPVPTLVDLLDQHFFPKWLKTLTMWINMNPNHEQISNWYTGWKSLMPAIIVEHPTIKGRFHSALDIMSRAVGGPSMPLPPPPPTIQGGLAEAVRTASQMPHGFKELVQKRCEERGILWMPIPSRFREAKQVYRCGARLQAYIDRGVLFVSQDGTNFIPMSVQSMLELCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00811978;
90% Identity
iTF_01169838;
80% Identity
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