Hcor005860.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- TFIP11
- Assembly
- GCA_017140985.1
- Location
- CM029357.1:740362-749209[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-73 3.7e-69 233.5 17.6 3 275 385 661 383 661 0.93 2 2 0.52 3.5e+03 -2.5 0.1 237 259 668 690 663 704 0.52
Sequence Information
- Coding Sequence
- ATGTCAGACGATGAAATGGAGAAATTCGAAATCACCGACTATGATTTGGACAACGAGTTTAACATGAACAGACCTTATAAACGACTATCCAAAAATCAAGCAACATACGGAATTTGGGCCGACGATGAAGATGGTGATAGTGATGCTGAACCTTCTGGTTTTGGAGGCCGTAAACAAAAAGATAAGAAATATAAAAAAAACTACACTGCTCCGGTTTCATTTGTTGCTGGAGGTGTTCAACAAGCCGGTAAAGAAAAAAATGAAGTTAAGACTGAAGATACAAAAGATGTCAAAACAGAATATATGGAGGATAATAGATCTATATCTAGTGATGAAGAAAAACCTGCCTTTAGTTTTGACATTGATCAAGAGTTGGCAGGTTTACGAAAAAAACGACCTCAAGTAAACCCAAGGATCATGAACAAAGGTTTGGGAGACTGGGAAAAACACACAAAAGGAATTGGTGCAAAACTGTTGCTTGGGATGGGTTACCAACCAGGCCATGGTTTAGGAAAAAAACTTCAAGGTATTACAGCGCCAGTCGAAGCAAATTTAAGAAAAGGAAGAGGAGCAATCGGTGCATATGGGCCTGAATCTAAAAGTAAGTCAATAAAAGTAGAAAGCGAAAAGGTATCAGAAAAGTCAAAAAATAAAAAAATTCCTGCCAATGGATGGAGAAAAGCACTTAAGGCAGAAAAAACTCAATACGTTTATAAAACCGTTGAAGAAGTTATTGAAGAAAGTAAACATCCAGGAAAAAGAAAAAGAGAATTCAATGAATTAAGTAGAGTAAAAGTAATTGACATGACTGGACCAGAACAAAGGGTATTGTCTGGTTACCATGCTATATCTGGTGTTAAAAAACCAATTGATCACTGGGAAGTACAGAAAGATAAAACGTTCTTTAATTTTGATATGCCTGAACTACTATACAATCTAAATCTTTTATTTGAAATGGCTGAACAAAAAATTGTAACAAATAACCAAGAACTTTGTAACTGTGAGGATCGCCTTGTAATCATAGAACAAGAATCCAGAAAATTAGCAGAAACTATGAAAGATAAAGACAAATCGATCGAATCTTTAGAAAAAATGCTATTAATTATGGAATCTTTAAACGAAGAATTAAAAAAAAATACATTGAATAGTGATCAAGCCATAAAACGTTTATTGGAAATAAAAGAAATGTATTATATAGATTATCGAATAAATGGTGGGTCAAATTTTGCATTATCAATAGCACAAAAATTAATCAAAGAAAAACTGTCTATGTGGGATCCATTACAAGAGCCAACTATGCCTTTTGAAGAAATAAAAAAATGGAAAGAACTGTTAACTTTAAATGAACCATGTCCTATTGGGTTCCAACCAACTAAAGAATTCCAAACCTTAATTTGGCAAGAATGGGTACCTAAGGTTCAAAAAGCATGTGGCAAAAAAAAAAATAGAAGAAAAGCTTATAAGCGGTGGAATTGTCGCGATTACAGTAGTATGTTACAACTTATTGAACATTCTACTCAAATGATACCAAGTGACATAATTAATAATGTTCTTGAGAATATGATTTTACCAAAAATACAATCTGAAGTAGAATTATGGGATCCATTAACAGATTTAGTGCCAATCCATTTGTGGATTCATCCATGGTTACCATATTTAGGCAAACATTTTGAAACAACTGTCTATCCTGCTCTAAGACAAAAGTTAGGTGCCGCATTGAATGCCTGGCATCCATCTGACAACTCTGCTAAATTGATGCTTCAACCATGGATGAATGTATTCCAACAAGGCTATATGGAAGCTTTCTTAATCAGAAACATTGTTCCAAAGTTACAAGTTGCTCTTCAGACATTAGTGATCAACCCACATCATCAACAATTAGACAACTGGAACTGGGTGAATGCTTGGTCAGATGTACTACCAATTCCTACATTAGTAGAACTACTAGATCAACACTTTTTCCCTAAGTGGCTAAAGACACTCACCATGTGGATCAATATGAACCCTAACCATGAACAAATAAGTAACTGGTATACTGGATGGAAGTCTTTAATGCCTGCTGTTATTGTTGAGCATCCAACAATTAAAGGTCGGTTTCATTCTGCTTTGGATATAATGAGCCGAGCAGTTGGAGGACCTTCTATGCCACATCCACCTCCACCTCCTACAATTCATGGTGGTCTTGCTGAAGCTGTACGTACTGCATCTCAGATGCCTCATGGTTTTAAAGAGTTGGTGCAAAAACGATGTGAAGAACGTGGTATTTTATGGATGCCAATTCCTGGTCGTTACAGAGAAGCCAAACAAGTTTACAAATGTGGAGCAAGGCTTCAAGCATACATTGACCGGGGAGTTCTATTTGTCAGTCAAGATGGTACAAATTTTTCTCCAATGTCAGTGCAGTCAATGTTAGAATTATGTGAAGATTAA
- Protein Sequence
- MSDDEMEKFEITDYDLDNEFNMNRPYKRLSKNQATYGIWADDEDGDSDAEPSGFGGRKQKDKKYKKNYTAPVSFVAGGVQQAGKEKNEVKTEDTKDVKTEYMEDNRSISSDEEKPAFSFDIDQELAGLRKKRPQVNPRIMNKGLGDWEKHTKGIGAKLLLGMGYQPGHGLGKKLQGITAPVEANLRKGRGAIGAYGPESKSKSIKVESEKVSEKSKNKKIPANGWRKALKAEKTQYVYKTVEEVIEESKHPGKRKREFNELSRVKVIDMTGPEQRVLSGYHAISGVKKPIDHWEVQKDKTFFNFDMPELLYNLNLLFEMAEQKIVTNNQELCNCEDRLVIIEQESRKLAETMKDKDKSIESLEKMLLIMESLNEELKKNTLNSDQAIKRLLEIKEMYYIDYRINGGSNFALSIAQKLIKEKLSMWDPLQEPTMPFEEIKKWKELLTLNEPCPIGFQPTKEFQTLIWQEWVPKVQKACGKKKNRRKAYKRWNCRDYSSMLQLIEHSTQMIPSDIINNVLENMILPKIQSEVELWDPLTDLVPIHLWIHPWLPYLGKHFETTVYPALRQKLGAALNAWHPSDNSAKLMLQPWMNVFQQGYMEAFLIRNIVPKLQVALQTLVINPHHQQLDNWNWVNAWSDVLPIPTLVELLDQHFFPKWLKTLTMWINMNPNHEQISNWYTGWKSLMPAVIVEHPTIKGRFHSALDIMSRAVGGPSMPHPPPPPTIHGGLAEAVRTASQMPHGFKELVQKRCEERGILWMPIPGRYREAKQVYKCGARLQAYIDRGVLFVSQDGTNFSPMSVQSMLELCED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01347100;
- 90% Identity
- -
- 80% Identity
- -