Basic Information

Insect: Silvanus unidentatus
Gene Symbol: -
Assembly: GCA_963930825.1
Location: OZ005759.1:4918994-4924076[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.3 5.3e+03 -2.2 0.0 21 44 371 394 368 402 0.78

2 12 0.12 4.9e+02 1.1 0.1 23 45 401 423 397 429 0.88

3 12 0.34 1.4e+03 -0.3 0.0 25 44 459 478 448 483 0.84

4 12 0.0049 20 5.6 0.0 21 46 483 508 479 513 0.91

5 12 0.0092 38 4.7 0.1 22 45 512 535 508 538 0.87

6 12 0.0049 20 5.6 0.0 21 45 539 563 536 566 0.91

7 12 8e-05 0.33 11.3 0.1 21 47 567 593 564 600 0.90

8 12 0.19 7.7e+02 0.5 0.4 26 45 600 619 593 625 0.86

9 12 0.079 3.2e+02 1.7 0.1 22 47 624 649 615 655 0.78

10 12 0.0035 14 6.1 0.2 23 51 653 681 648 683 0.87

11 12 0.52 2.1e+03 -0.9 0.0 21 45 679 703 676 710 0.82

12 12 0.0093 38 4.7 0.1 21 48 707 734 698 737 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.3	5.3e+03	-2.2	0.0	21	44	371	394	368	402	0.78
2	12	0.12	4.9e+02	1.1	0.1	23	45	401	423	397	429	0.88
3	12	0.34	1.4e+03	-0.3	0.0	25	44	459	478	448	483	0.84
4	12	0.0049	20	5.6	0.0	21	46	483	508	479	513	0.91
5	12	0.0092	38	4.7	0.1	22	45	512	535	508	538	0.87
6	12	0.0049	20	5.6	0.0	21	45	539	563	536	566	0.91
7	12	8e-05	0.33	11.3	0.1	21	47	567	593	564	600	0.90
8	12	0.19	7.7e+02	0.5	0.4	26	45	600	619	593	625	0.86
9	12	0.079	3.2e+02	1.7	0.1	22	47	624	649	615	655	0.78
10	12	0.0035	14	6.1	0.2	23	51	653	681	648	683	0.87
11	12	0.52	2.1e+03	-0.9	0.0	21	45	679	703	676	710	0.82
12	12	0.0093	38	4.7	0.1	21	48	707	734	698	737	0.89

Sequence Information

Coding Sequence: ATGTGTCACATATTGGACAGAGAACATAAAAATGATCGATGTTTAAAACCTTGTTTGAAAAAACTGTGTCCCAATCCTGAGCATCTTTGcaagaaaaattgttatgaAGTTTGTGGCCCATGTACGTATCCGAAACAATGTCGCTTAGATTGTGACCATGAAGTCACTATGGCCTGTTCAGATGATCcaaaaaagtttttttgttACGTACAAGTTGAAACAACATTACTTTGTGGTCATAAAACGATAAAAAAGCGCCatgaagatattaataaaatgcGATGTAAAGTTGCATGTTCATTTCAAATAAAACGTTGTGGCCATGCTTGTGAAATGACCTGCCACGTTAATGAAGATCCCGACCATATCTCAGTAAATTCTATAAAAGAGTGTACAAAAACAAGAGAAGGTTGCACAATGGGTAAAGATGAAAAGAAACATTTACGCCGAAAGAAATGTTTTGAAGTATGTGAACCATGCGattttaaaatttccaaacaaaGATCTTGTGAACATGCATATAAAATTGAATGTAAGACTGATGTGGAACCAATAATTTGTGAAAAACCGTGCACAAAACAATTGCCATGTGGACATAAATGCGTAGAAGCATCATTCCCATTCGACGAAAATTATGTCAGCAACAAGATCTGTTTAGAATGTTGCATTAATCTGGTAGAGTTATACAATTTTCGTGAAAATATTTGCATTTGGTTTGAAATTGACGATAACACACAGAACAGAAAATGTTGTTTGTGTATTCAATCAGAAGATTCCATGAAATGTGTCTTCATCAAGGATGATTCGTTGAAAATTTTCGAGCTTCTAACGGATATTTGTTCCAGTGATTTAAACATCAATTATTCGGATAAAATTTGTTTAGAATGCTATCAGGGCTTGATTAAGAACTATTCATTTCATTTAACGTGCCAGAAAGCGGTACATTTTTGGACTGCTCGAATACTGCATATTTCGaatgatttaaagatatgTGAAAGGCAGAAAGTACAGACAAAAGAAATTTCCGgtacatttttattcaaatgcACATTCTGTTCCAAAGGGTTCAAAAGAAAAGATGTATTTAAGAACCACTATCGAATGCATACTGGCGAAAAGCcatttaaatgcaaattatGTACGAAATCATTTACACTGAACTCAACATTAAAACAACATATGGTGACCCATTCTGTTACGAGACCATTCGAATGTGAGATTTGCTTAAAAAGGTTCAAGAATAAAGTCAAGTTAAAGAGACACCACGATGTTCATGCAACCGATAGACGGTTTATGTGTGAAATATGTTCCAAGTCATTCTTTAGAAAAGATAGACTGAATGAACATTTAAAAACCCACTCAACTGAACGACTATTCCATTGCGAACTATGCACAAAAAGCTTCAAATTGCACTCAAATTTGAGGCAACATGTGGCAACGCACACTGAAGAAAGACCGTTCACTTGTGCAATGTGTTCAAAAGCGTTCAAAAATTACATCGCTCTAAAAAACCATTTGGAGACGCATTCAGGGGAGAAGACATTTATGTGTGAGATATGTTCCAAGTTATTCCGAAGAAGTGATATCTTGAAGCAGCATTTAAGGACACATACAGGCGAAAAGCCGTACACGTGTGACGTGTGTTCAAAAACATTCACATTGAACTCCAGTTTAAAACAGCATTTAGAGACACACAGTGACGAAAGGCCGTTTAAATGTGAAATATGTTCAAAAGCATTCAAAAACGCGTCGAAATTGAAAAGACATTTAGAGATACATAGAGATCAGAAATCGTTTATGTGTGAAATATGTTCGCGGCTGTTTAGAAGAAGAGACAGATTGAAAGAGCATTTACGAACTCATAGTGGTGAAAAGTTATATAAATGTGAAGTGTGTTCGAAGAGGTTTGCCAGTTCCAGTAATTTAGCAAGACATTCGACAATGCACACTGGACTGAAACCGCATAAATGTGAAATTTGTTTACGAACGTTCGCCCAGGCCATCCATTTAAggaaacattttaaaatacataCTGGTGAGAAACCTTTTAAATGTGAACTATGTGCCAAATTGTTTAGCCGTAAAGATAAGTTAAAAGAACATATGCGAACACATACAGGTGAAAAGCCGTATGAATGTGATTTATGTTCGGAGAGTTTCACTTATGGGAGCTATTTGAAAAGACATTTACAAGTACATCATGGTAATTTTGAAATAGCTCAGTATGGACTTTCAAGTCAGAGTATGGAAAGTCAGTGa
Protein Sequence: MCHILDREHKNDRCLKPCLKKLCPNPEHLCKKNCYEVCGPCTYPKQCRLDCDHEVTMACSDDPKKFFCYVQVETTLLCGHKTIKKRHEDINKMRCKVACSFQIKRCGHACEMTCHVNEDPDHISVNSIKECTKTREGCTMGKDEKKHLRRKKCFEVCEPCDFKISKQRSCEHAYKIECKTDVEPIICEKPCTKQLPCGHKCVEASFPFDENYVSNKICLECCINLVELYNFRENICIWFEIDDNTQNRKCCLCIQSEDSMKCVFIKDDSLKIFELLTDICSSDLNINYSDKICLECYQGLIKNYSFHLTCQKAVHFWTARILHISNDLKICERQKVQTKEISGTFLFKCTFCSKGFKRKDVFKNHYRMHTGEKPFKCKLCTKSFTLNSTLKQHMVTHSVTRPFECEICLKRFKNKVKLKRHHDVHATDRRFMCEICSKSFFRKDRLNEHLKTHSTERLFHCELCTKSFKLHSNLRQHVATHTEERPFTCAMCSKAFKNYIALKNHLETHSGEKTFMCEICSKLFRRSDILKQHLRTHTGEKPYTCDVCSKTFTLNSSLKQHLETHSDERPFKCEICSKAFKNASKLKRHLEIHRDQKSFMCEICSRLFRRRDRLKEHLRTHSGEKLYKCEVCSKRFASSSNLARHSTMHTGLKPHKCEICLRTFAQAIHLRKHFKIHTGEKPFKCELCAKLFSRKDKLKEHMRTHTGEKPYECDLCSESFTYGSYLKRHLQVHHGNFEIAQYGLSSQSMESQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01345153;
90% Identity: iTF_01345153;
80% Identity: iTF_01345153;