Sbip005156.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- Rfx2
- Assembly
- GCA_949320045.1
- Location
- OX439445.1:1542193-1563937[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-37 3.6e-33 114.4 0.0 3 78 203 278 201 279 0.97 2 2 1 8e+03 -2.1 0.0 24 36 615 627 599 635 0.70
Sequence Information
- Coding Sequence
- ATGTCCGAGATGGGGTTTGAAAATGTGTTCTACTTAGAGAACTTCGAGTGCGCTGGTGACGAGGTGTTGGTGGAGTCCTCGCCGCCCGCCTCTCCCGACATGGCTGCAAGACTCGCAGCGCCTGCGCAGAACAACGGCGCAGGTGGCACATCCCCGACCGCCGTCCGCGAACTGATCGTCATCCCGGAGCTGCCCGACTCCTTACATCTGCAGCACGCCATACAGCAGGTGTCCAGCACCGTGGTGGAAGTGAACGGCGCCGTCAACGGAGACAGCTCCGGCCAGTCGAGCCCCAACGCCGACGCGCAGCATACTTTCATCACCGTCGCAAGTGAGGGAGGGAATGGAGTCAACTACCATGTGCAATACGTCACCGAGCCCCAGGAGATTTACACGCAGGGACATCAGActatGGAGACGCTGCGTTCGTACCCGGTGTACGGCGTGGCGACTGTCGGCAACGCTGTGGGCGAGGCCGAGGCCGCCGACGCGGCCTGGGGCCCCGCCGCCAACGCCGACTACACGGCCTATGGCGTCGTGGTGGCAGGCGACGAGGCGGGCGAAGCCCCGGCGTCTCCGGCCGGAGCGCCCGCGCGAATGCCGCCTGCGACGGTGCAATGGCTGCTCGATCATTACGAGACCGCGGAAGGCGTGTCTCTCCCCCGTTCCACGCTCTACGCCCACTATCTCCGCCACTGCTCGATCCACCACCTGGAGCCAGTGAACGCGGCCTCGTTCGGAAAGCTTATCCGTTCGGTCTTCGTGGGATTACGTACGCGCCGGCTCGGCACACGCGGCAATTCTAAATACCATTATTATGGAATCCGCGCCAAGCCCGACGCAGAGTCTCAGCCGCCCGATGCCACGGACAGCGCGGATGACAACGCAGACCTCAATGAGAAGCAGGAGTCCCGGGCTCGCTCCCGGTCCCGCGACGAAGGCCCGGGCTCGCCTCTGGGCGCCGCTAGCTCCGCGCATCGCCAGTACCTGGCCTCGGTGTCGGCGCCCTCGCCGCCCGCGCTCCAAGTGGACGCCGAAGACGTGCCGCCCGCCGCCTTGCAGCTGCTGAGGAGACACCATCGCGAGCACGGCGCGATGTTCTTGGAGGCCGTGGCGGCGCTGGACACGGGCGCGGTGGAGGCGGCGCGCCGCGCCTTCTGGCGCCGCAGCGCCGACGACGACGTGCTGTGCCGCCGCACGCTGGCCAAGCTCTGCGCCAGGAAGGACGTGTGCCGCTGGCTGCGCGCGGCCGACACCCAGCTCTACCAGCGCGCTGTGGACATGCTGTTGCCGGATGTGCTGCGCCCCATCCCGCCGCAACTCACACAGGCCATCCGCAACTTCGCGAAGAGCGTAGAATGCGCGGTGTCAGCGGGATCAGGCGGCGCCCCGCTGCCGGCGGTGCGCGCTCAGGCGCGGGCCGCGGCTGCACTGGCCGGGGCTTTGCGGCGGTACACGTCGCTCAATCACTTGGCGCAGGCGGCCCGCGCAGTCCTCACTAACCACCATCAGATACACCAGATGGTGTCTGATCTGAACCGCGTGGATTTCCGCGTGGTGCGCGAGCAGGCCTCCTGGGCCTGCGCCTGCCCCTCCGCCGCCGTCGCGCTCAAACTAGAGGCCGACTTCAAGGCGACGCTGGGTCGCGGCGCGACGCTGGAGCAGTGGGCGGCGTGGCTGGAGCGCTGCGTGGGCGGCGCGCTGGCTGCGCACGCTTCCCGCGCTGACTACGTcccgcgcgcgcgccgccttCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGCGAACTCACGCTCAGGTCTGCGGCATCGTTCGGCTCGTTCCACCTGATTCGGCTGCTGTACGACGAGTACGTGTCATATCTGATCGAGCGGCGCGTCGCCGCGCATCTCTCTGCGCCGCCTATCGCCGTCATGCATCGCGAGGAGGACGAAGAAGATGATGAGAACCAAGAAGAGAACAGAGTGGAGGGACTCGAAGAGGACCAGGACTGGGACTGGGAAGATGAAGAGGAAGATGAAGAGCCCGAGAGTAAGAAGGTTAAACATAACGAGTAA
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQNNGAGGTSPTAVRELIVIPELPDSLHLQHAIQQVSSTVVEVNGAVNGDSSGQSSPNADAQHTFITVASEGGNGVNYHVQYVTEPQEIYTQGHQTMETLRSYPVYGVATVGNAVGEAEAADAAWGPAANADYTAYGVVVAGDEAGEAPASPAGAPARMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCSIHHLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPDAESQPPDATDSADDNADLNEKQESRARSRSRDEGPGSPLGAASSAHRQYLASVSAPSPPALQVDAEDVPPAALQLLRRHHREHGAMFLEAVAALDTGAVEAARRAFWRRSADDDVLCRRTLAKLCARKDVCRWLRAADTQLYQRAVDMLLPDVLRPIPPQLTQAIRNFAKSVECAVSAGSGGAPLPAVRAQARAAAALAGALRRYTSLNHLAQAARAVLTNHHQIHQMVSDLNRVDFRVVREQASWACACPSAAVALKLEADFKATLGRGATLEQWAAWLERCVGGALAAHASRADYVPRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHLSAPPIAVMHREEDEEDDENQEENRVEGLEEDQDWDWEDEEEDEEPESKKVKHNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182404; iTF_00266919; iTF_00119339; iTF_00638391; iTF_00737209; iTF_00686070; iTF_00376832; iTF_01219520;
- 90% Identity
- -
- 80% Identity
- -