Samb025988.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_963921215.1
- Location
- OY992507.1:4895809-4902278[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-10 2.5e-05 26.1 2.8 222 297 10 77 5 80 0.74 2 2 1.2 3.6e+04 -4.0 16.9 2 165 77 137 74 149 0.52
Sequence Information
- Coding Sequence
- atgTTAATATATGATCTGTCGCCCCCAGACGTGCGGTTGCAGAAGCTGCTGGGCTCCAAACAAGCGCTGGAGTCGGAGGTGCGCAAGCTCAAGCTGCAGCTGAACGAGGAGCGCGCCGCCACGCACAACGGCGTCACATCCCACCACGACCTGCACTACGAGACGGAGCTGGAAAGCCTGCGCCGCTGCGTGTCCGAGGCCAAGGCGCGTGCGGCGCGCGCCGAGGCCGAGGCCGCGCTGCAGGCCGCCGCCGGCGCGCGACTCGAGGCGCAGGTCGCGCGGCTCAAGGCGCGGCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGCCTGCAGCGGGAGGCGCGGGAAGCCTTGAACCGCGTGGAGGAATTGGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAACTCAAGAACGCCAAGTCTGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MLIYDLSPPDVRLQKLLGSKQALESEVRKLKLQLNEERAATHNGVTSHHDLHYETELESLRRCVSEAKARAARAEAEAALQAAAGARLEAQVARLKARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00952735;
- 90% Identity
- -
- 80% Identity
- -