Samb048054.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scoparia ambigualis
Gene Symbol
-
Assembly
GCA_963921215.1
Location
OY992514.1:14001119-14007918[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-08 2.3e-05 26.3 0.0 5 37 1 32 1 39 0.93

Sequence Information

Coding Sequence
ATGCAAAAGGCATTAGATGCTATAAAAACCGGTAAAAGCATCAGGCAAGCAGCTGCAGAGCATAACATTGCCTTTTCCACTCTGCAAAGATATAATGGAAAAGAAAATCCTGACCGCCTGACACCAAATTATTCCGTTCGTAAAATATTTAGGGCTGAACATGAGGTGGCCTTATGTGACTATTTCAAAAAATGTGCCTTAATGTTTTACGGTCTTACCACTAGAGATTGCCGCCAAATAGCTCATCAAATGgcgaaaataaataatgtgcCAGTTCCTGAGAGTTGGGAAAGTAATAAAATGGCTGGTATCGATTGGTTCCGAGGGTTTCGTGAGCGATTCCCTGATATGTCGTTACGAAAACCTGAAAACTGCAGCTTGGCACGAGCTACAGCATTCAATAAGGAAaccgttaaaatattttttgacaacCTTCAAAATGTGCTTAGCCGCAGTCCAGCCTTTGCAGACGGCACGCGCATTTATAATTTGGACGAAACTGCTACAAGCACTGTGCAGAAAAATCCGAGAGTTTTAGCTCCAAAGGGAAAAAGAAATATATGCAAAGTCTCCAGCGGTGAAAAAGGTACGCTCGTCACAACGTGTAACATCATAAGTGCAGGAGGTATTGCACTTCCTCCCGCATTGGTCTTCCCACGCAAGAACATAAATCCTCGGATGAAAGTTGGAACACCACCAGGTTCTCTTATCCTCGCGTCTCCAACAGGGTGGATGAACACTGAAACTTTTGTAGAGGTAATGAAGCATTTTGTGGAGCGATCGGGATCTACAAAAGATTCTCCAACAGTCCTCATTATGGACAACCACGAATCGCATTTGTCGATTGCTGCACTTGATTTGGCCGAAGAGTCGGGGGTTACTGTGCTTACTTTACATCCACATACATCGGCAAAACTTCAGCCGTTAGACGTCGGTATCCATGGACCGTTTAAATCTTACTTTGCGTCAGCAATGGAGTCATGGATGATGCGGAATCCTGGATGTCCAGTGACCATTTACGAAATTGGAACGCTAGTTGGTCAAGCCTTTGAAAAGTCTATGACACCAGTAAACATAAAGAATTCATTCAAGAAAACTGGCATATACCCCTTCGACAGAAATATATTCTCGGAGGAAGATTTTATGCCGAGCAGCGTCACTGACAGGCCTACTGTTGCAGAACCGACAGcttTTGTCGTCGACCGTAATGAAAACTTGACAGTGACCATTCAAGAAGCGGAAAATGAAATGTCAAATCGAGATGTTGACACTCCAAGTCCCTCTCTGATAGACGCCATTCAATCGTTTGTTCAATCTCCTTTACACAGCGCAAGTGCTGCGTCAGTACCGGATACGTTACCTTCAGAAGTTTGTGCTAGAATTCCAATTTCCCTGTCTCACTTGTGCTTGGAGGCAATAATTGCACCTATTAATGCAATTCCTGCAGTTCAATCAGAAGATAATCATCCTCTTTACTTAGATACTTCATCTCCACCATCAGCAGCTAGACACACTGATGAAACATCTGCCAAGTCATCATATGCCCAAATTGACTTATCGACCCGATTAGTAACACCAGAGGAATTCCGAAAACCTTTAAAAGCAGCTGCaaggaataataaaataaaaccaaggcGATTAGGTAAATCTCTTATTGCAACTGACACACCGGAAAAGAATGAGattgagaaaaataaaaaggcaataaaaagaaagaaagtacCGCAATCCAAAGGAAAGAAAGCTGTTAAAAAAGTTCTTCAAAGCGACTCGGAAGAGGATTGTGACATTATCTTAGATGATGACTCGCCAGATGAAGGGAGCTGGTTGAGTGATGAAGCAGACactgtaaatattattacgcaaGAGACGTTGAAAAAGCCTTTGCCAAGAATGCCAAGAGAGGGAGATCGTACAAAGGCCGAAGCGATCGTTGAAAATGTACTCTCACCTCACGCACTATCATTGGTTTTAAAAGATGTAGACCAAGCGCCATATTCGATAGCTTGCGACGCTTCAAACAAGGGCAACTGCAAGTTATATCCTGTTGTAATACGGTTCTTCAATGCAGAAAAAGGTACGACATCTTCTATTATCGACTTCTACGAAGATTCAGATGAGACTTCCGCTGCCATAGCCGAAAATATGATAAAGTGCATCAAGAAAGTTGACCTTGACCCAATACAGACAATATTTGCGGTTCCACCTTCAAATGCGTTTGTAGAACGCATATTTTGCGTCATGAAAAATATTTGGCAGGACGAAAGAAATCGTCTGAAAATCGAAATGGTGAAGGCGGAATTGATGGTGATGTTCAACTATAATATAAACTGTTCAGAGTTTGAAAAAATTCTAAGAACAGATGCAGGAAAACTACTTGTCAAAAATGTTAAAAGCGAGAGCAAGtacaattttaagaaaaaataa
Protein Sequence
MQKALDAIKTGKSIRQAAAEHNIAFSTLQRYNGKENPDRLTPNYSVRKIFRAEHEVALCDYFKKCALMFYGLTTRDCRQIAHQMAKINNVPVPESWESNKMAGIDWFRGFRERFPDMSLRKPENCSLARATAFNKETVKIFFDNLQNVLSRSPAFADGTRIYNLDETATSTVQKNPRVLAPKGKRNICKVSSGEKGTLVTTCNIISAGGIALPPALVFPRKNINPRMKVGTPPGSLILASPTGWMNTETFVEVMKHFVERSGSTKDSPTVLIMDNHESHLSIAALDLAEESGVTVLTLHPHTSAKLQPLDVGIHGPFKSYFASAMESWMMRNPGCPVTIYEIGTLVGQAFEKSMTPVNIKNSFKKTGIYPFDRNIFSEEDFMPSSVTDRPTVAEPTAFVVDRNENLTVTIQEAENEMSNRDVDTPSPSLIDAIQSFVQSPLHSASAASVPDTLPSEVCARIPISLSHLCLEAIIAPINAIPAVQSEDNHPLYLDTSSPPSAARHTDETSAKSSYAQIDLSTRLVTPEEFRKPLKAAARNNKIKPRRLGKSLIATDTPEKNEIEKNKKAIKRKKVPQSKGKKAVKKVLQSDSEEDCDIILDDDSPDEGSWLSDEADTVNIITQETLKKPLPRMPREGDRTKAEAIVENVLSPHALSLVLKDVDQAPYSIACDASNKGNCKLYPVVIRFFNAEKGTTSSIIDFYEDSDETSAAIAENMIKCIKKVDLDPIQTIFAVPPSNAFVERIFCVMKNIWQDERNRLKIEMVKAELMVMFNYNINCSEFEKILRTDAGKLLVKNVKSESKYNFKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00682305; iTF_00682306; iTF_00682307; iTF_00682308; iTF_00682309; iTF_01282183; iTF_01334701; iTF_01334703; iTF_01334767; iTF_01334704; iTF_01334768; iTF_00683249; iTF_01334705; iTF_01334706; iTF_01334707; iTF_01334739; iTF_01334708; iTF_01334709; iTF_00681590; iTF_01334710; iTF_01334712;
90% Identity
-
80% Identity
-