Samb002708.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992501.1:27856547-27858897[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-09 2.8e-06 29.2 0.0 1 37 14 49 14 56 0.92
Sequence Information
- Coding Sequence
- ATGGGCAGAAATAGAAAAAATCGTAAAATTGGTACTCATACTGAAGACCAAATGCAAAAGGCATTAGATGCTATAAAAACCGATAAAAGCATCAGGCAAGCAGCTGCAGAGCATAACATTGCCTTTTCCACTCTGCAAAGATATAATGGAAAAGAAAATCCTGACCGCCTGACACCAAATTATTCCGTTCGTAAAATATTTAGGGCTGAACATGAGGTGGCCTTATGTGACTATTTCAAAAAATGTGCCTTAATGTTTTACGGTCTTACCACTAGAGATTGCCGCCAAATAGCTCATCAAATGgcgaaaataaataatgtgcCAGTTCCTGAGAGTTGGGAAAGTAATAAAATGGCTGGTATCGATTGGTTCCGAGGGTTTCGTGAGCGATTCCCTGATATGTCGTTACGAAAACCTGAAAACTGCAGCTTGGCACGAGCTACAGCATTCAATAAGGAAaccgttaaaatattttttgacaacCTTCAAAATGTGCTTAGCCGCAGTCCAGCCTTTGCAGACGGCACGCGCATTTATAATTTGGACGAAACTGCTACAAGCACTGTGCAGAAAAATCCGAGAGTTTTAGCTCCAAAGGGAAAAAGAAATATATGCAAAGTCTCCAGCGGTGAAAAAGGTACGCTCGTCACAACGTGTAACATCATAAGTGCAGGAGGTATTGCACTTCCTCCCGCATTGGTCTTCCCACGCAAGAACATAAATCCTCGGATGAAAGTTGGAACACCACCAGGTTCTCTTATCCTCGCGTCTCCAACAGGGTGGATGAACACTGAAACTTTTGTAGAGGTAATGAAGCATTTTGTGGAGCGATCGGGATCTACAAAAGATTCTCCAACAGTCCTCATTATGGACAACCACGAATCGCATTTGTCGATTGCTGCACTTGATTTGGCCAAAGAGTCGGGGGTTACTGTGCTTACTTTACATCCACATACATCGGCAAAACTTCAGCCGTTAGACGTCGGTATCCATGGACCGTTTAAATCTTACTTTGCGTCAGCAATGGAGTCATGGATGATGCGGAATCCTGGATGTCCAGTGACCATTTACGAAATTGGAACGCTAGTTGGTCAAGCCTTTGAAAAGTCTATGACACCAGTAAACATAAAGAATTCATTCAAGAAAACTGGCATATACCCCTTCGACAGAAATATATTCTCGGAGGAAGATTTTATGCCGAGCAGCGTCACTGACAGGCCTACTGTTGCAGAACCGACAGcttTTGTCGTCGACCGTAATGAAAACTTGACAGTGACCATTCAAGAAGCGGAAAATGAAATGTCAAATCGAGATGTTGACACTCCAAGTCCCTCTCTGATAGACGCCATTCAATCGTTTGTTCAATCTCCTTTACACAGCGCAAGTGCTGCGTCAGTACCGGATACGTTACCTTCAGAAGTTTGTGCTAGAATTCCAATTTCCCTGTCTCACTTGTGCTTGGAGGCAATAATTGCACCTATTAATGCAATTCCTGCAGTTCAATCAGAAGATAATCATCCTCTTTACTTAGATACTTCATCTCCACCATCAGCAGCTAGACACACTGATGAAACATCTGCCAAGTCATCATATGCCCAAATTGACTTATCGACCCGATTAGTAACACCAGAGGAATTCCGAAAACCTTTAAAAGCAGCTGCAaggaataataaaagaaaaccaAGGCGATTAGGTAAATCTCTTATTGCAACTGACACACCGGAAAAGAATGAGattgagaaaaataaaaaggcaataaaaagaaagaaagtacCGCAATCCAAAGGAAAGAAAGCTGTTAAAAAAGTTCTTCAAAGCGACTCGGAAGAGGATTGTGACATTATCTTAGATGATGACTCGCCAGATGAAGAGAGCTGGTTGAGTGATGAAGCAGACactgtaaatattattacgcaaGAGACGTTGAAAAAGCCTTTGCCAAGAATGCCAAGAGAGGGAGAGTATGTTTTAGTAGAATTTACgtccaaaaaacaattattgtacTATGTTGCTAAGGTACTAGAAGAACGAAATGACACACTTGAGCTCTATGTGAGTTACTTGAGACACAAGAAAGGGCATTTTTACATGCCAAATACTCCAGACTTGGCCTATGTCAAGGATGATAATATTAAGCTTTTATTACCAACTCCTGCATCAAGTGGTAGTACTGCTCGTCAACAGTCATATCTTACTTTTGGCGTTGACTTGAGTGGCATAAATATTCGTTAA
- Protein Sequence
- MGRNRKNRKIGTHTEDQMQKALDAIKTDKSIRQAAAEHNIAFSTLQRYNGKENPDRLTPNYSVRKIFRAEHEVALCDYFKKCALMFYGLTTRDCRQIAHQMAKINNVPVPESWESNKMAGIDWFRGFRERFPDMSLRKPENCSLARATAFNKETVKIFFDNLQNVLSRSPAFADGTRIYNLDETATSTVQKNPRVLAPKGKRNICKVSSGEKGTLVTTCNIISAGGIALPPALVFPRKNINPRMKVGTPPGSLILASPTGWMNTETFVEVMKHFVERSGSTKDSPTVLIMDNHESHLSIAALDLAKESGVTVLTLHPHTSAKLQPLDVGIHGPFKSYFASAMESWMMRNPGCPVTIYEIGTLVGQAFEKSMTPVNIKNSFKKTGIYPFDRNIFSEEDFMPSSVTDRPTVAEPTAFVVDRNENLTVTIQEAENEMSNRDVDTPSPSLIDAIQSFVQSPLHSASAASVPDTLPSEVCARIPISLSHLCLEAIIAPINAIPAVQSEDNHPLYLDTSSPPSAARHTDETSAKSSYAQIDLSTRLVTPEEFRKPLKAAARNNKRKPRRLGKSLIATDTPEKNEIEKNKKAIKRKKVPQSKGKKAVKKVLQSDSEEDCDIILDDDSPDEESWLSDEADTVNIITQETLKKPLPRMPREGEYVLVEFTSKKQLLYYVAKVLEERNDTLELYVSYLRHKKGHFYMPNTPDLAYVKDDNIKLLLPTPASSGSTARQQSYLTFGVDLSGINIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334769;
- 90% Identity
- iTF_00682305;
- 80% Identity
- -