Samb048743.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992514.1:21422028-21433701[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-09 5.1e-06 28.4 0.0 2 39 113 150 112 154 0.91
Sequence Information
- Coding Sequence
- ATGTACATCTATATCAATGTATGCAGGTCGAAACAAGTTTCTCTGGCTGATGATTTATTCCTTTCGGAGGAGGAAGAAATGTCGGTGCAGCCAGCACCCGCCACCACCAACGCCGATAACAAGAAACGCTCCCGAGCAAACGCCTCAACCAGCGGAGCCTCTACCGCCACCTCCAAAAGGCCTAAAATAAATCCTATCGCTGTGAGACCGCGGCGAGTCACCGCCGCTGAAGTATTTGGCAGCGACAGCGAGGAGGAAGTGCAACAACCTTCGACTGTGGCTGATTCAAATATGCCTCGGAATTATGAGAGAAGATCATCGCGTGCTTCATACTCTCAAGATGACTTACAAGCCGCCATAGAAAAGGTGAAAAGCAATGAGCTATCTAACTATGTAGCTTCGCAAATATATGGAATTCCTAAATCCACACTTAATGACAGAGTTAGGAATAAATCTGGTGTAATCAGTCAAACCTTGGGACGGCCACTAGCAATTCCCCTAGCATTGGAATCGGAGCTCGCGTCTTGTCTTCGCACTCTTGAAAAATGGGGATGGGGATTGTCACGTGACGAAGTGCAGGAGATAACTGCAGAATTCattaaaaagaataaattaaaaacaccatTTGCAGATGGGAAACCTGGCGCTGATTGGTTCATCTCTTTTAGGAAGCGCCACTGTTTATCAATTAAGAAGCCGCAACCAGTCGAATATCTACGAAAGAGAATGACTGATCCCTTTGTGGTGTACGATTACTTCAAAAAATTGGATGAAGTATTAAAAGAGCTTAATCTTGGGTCATTGCCAGACAGGATCTGGAATTTAGATGAGACCTCGGTCTGTCTAGATCCAACGAAGACAAAAGTAGTTGGTGCAGTAGGCAAACCATGCACAAGAACCATCGCTGGTAGCgccaaagaaaacattacagtATTAACTACAGTCAACGCAGCTGGCAAAAAATTGACTCCTTTAATAATATACAAAGGCAAACACGTTTATGATGAATGGATGGCGGAGGACAAACAGGAGTATGATTTTGACATATCTTATGCAGCCAGTAATCGCGGCTGGATGGAAACGGAGATCTTTTATAACTACATGTTAAAAATCCTTATTCCCAGTTTGGGACCAGAACGACCCGTTCTGATTATTTATGATGGGCATAGCACCCATGTTGACAGCAAGGTTGTATCTTTGGCCATAGACAACAATGTGACTATACTGAAATTGCCAGCGCATACATCACACTTGCTCCAGCCGTTAGATTTAGCGGTATTTAAGTCTTTGAAGACCATGTGGGACAAAAAGCTTGTTAAATTTCAACGACAAAACGTCGGTGTCAAATTACGCAAAAAGGCTTTTGCTGAAATGTTTGCGGAAACATGGAATCAAACAAGTCCGAAAGTGATACAAAGCGGCTTCAAAAAAGGAGGCATTTATCCGTTTGACGCCGATGTAATCCCAGAGGAAAAATTTGACCCAACAGCTTTAAACAGATGGAAGATTTATGGAGCAAAAAAGGAGATAAAGCCCCTCAAACCACTTAAGCAGCTATGCTTAGAGACTATAAACAACGTTATGTTTTTCCCGACAGCTGCCTATACAATTCAGAGTGTTGCCTATTGTGACGCTGAACATCCTGATCCATCGGTACCAAAAAGTACGTTTGAGGAATTACTTTTACAGACGCTTAAATATCATCCCCAAACCACAAACAAAGTAACACGAAAACGTGTTGCATCCGGAGCTGAAGTTATCACACGCCAGATTTTGGAAAACAAGAAAAACGAACAGCATAAGACATCCAAAGAAACATTGCAACAGCTGAAAACAAAGTCAAccaaaatcaaacaaaattcaaaaagtTCTCTGAGTGGCACTGCAGTTCAAGTTAAAGTTGATTTGATGGACAAGAATATAGATGATTCTAGAAAAATTGGACAAAACAAAAGGAAAGTCAAAACTGAGACGGAACctcgaaaaaaaattaaaacgtgtTCGAGTACCTTAACTTCCATCAGCGAACAAATAAATTTTCAGAGCGATTCTGATGTCTTAGAAGACTGCGAAAATTTTTCAGAATTTGATCTATTTAAGTGGATTGAGGATGATGATGCACGTGATATGGATGGATTATTGCGAAAATCAATCAAAAAGTCACAAAAAGATTTGAATAAAGATTTGCAGTTTGATTTGATACAAATGGAATCGGAGATGAAAAACGATCTACAAGAACAGAAGATTAAAAACGTTTGGAATTTAGACACAGGACATAAACATGAAGACGAACATAGTGATATGATAGATATTTTGGATGATCAAACAGGATTTCTGCGAAAAGTGACAGTTACTAAGGCGATAGTAGAGAAACCAAAGCCATCAAAGGACTCCGTAAGTTGCAAATATCTcgaaaaatataaagaaaatgttGCTGATATCGTAAACCACCGAAACCGTAACGAAATACAGTCATAtaccaaaaaaaatgtaaagaaacgAACAAGtacaaaacctaaaaaaaagaagatattGCGTAGTAGCTCTACAACTACGGACGAAGATATTATGAGCGTTCATACTGATAGCGACATATGTGACGTAATATCGATTCAAAACGAGGAAGAAGATGAAAATGTAATAGTAGTAGTACCGACTCAATATGAAGAAAACGATAAAGATTTATTCAGAAAATCTATTGATGAAAAAGAAGCTGCTATATTTgcaaaaatttatgaaatcgaCAACATTGAAAAACAAACACTTATTGACAAAGAGAAACCAAAAACTAGGAAGAAAAGAGATGTACAAAAACTAGAAAGGCAAATAGTGACTCGGCAGACTAATAAAAAGCAGaaaaagaatgaaaaaaaagaaaacgaaGGTACAATATTAGTGTCGACAAAAAAAGTAAACGATGCTTGTACGTACCATCTTGGACATCATATATTGGCTAGGTACTTTTACAAGAACAGTTGGAAGCATTACGTGGGATCGATAACAGAAATTATTAATGAGAACCAGCTTGAAAAAACATATAGAATATCTTTCTATAAAACTGTACGgacaaaaaatacattaaaatttaccCAACCAAAGAGGTCTGACGAGGACTGTATACCAGCCAATCTAATTATCAAAGAAATAGAATTGATCCAAATTAAGGAAAATCCAAATGAATTTGTCTTAAATGATGATAGTGAtgatgtttatttttcataa
- Protein Sequence
- MYIYINVCRSKQVSLADDLFLSEEEEMSVQPAPATTNADNKKRSRANASTSGASTATSKRPKINPIAVRPRRVTAAEVFGSDSEEEVQQPSTVADSNMPRNYERRSSRASYSQDDLQAAIEKVKSNELSNYVASQIYGIPKSTLNDRVRNKSGVISQTLGRPLAIPLALESELASCLRTLEKWGWGLSRDEVQEITAEFIKKNKLKTPFADGKPGADWFISFRKRHCLSIKKPQPVEYLRKRMTDPFVVYDYFKKLDEVLKELNLGSLPDRIWNLDETSVCLDPTKTKVVGAVGKPCTRTIAGSAKENITVLTTVNAAGKKLTPLIIYKGKHVYDEWMAEDKQEYDFDISYAASNRGWMETEIFYNYMLKILIPSLGPERPVLIIYDGHSTHVDSKVVSLAIDNNVTILKLPAHTSHLLQPLDLAVFKSLKTMWDKKLVKFQRQNVGVKLRKKAFAEMFAETWNQTSPKVIQSGFKKGGIYPFDADVIPEEKFDPTALNRWKIYGAKKEIKPLKPLKQLCLETINNVMFFPTAAYTIQSVAYCDAEHPDPSVPKSTFEELLLQTLKYHPQTTNKVTRKRVASGAEVITRQILENKKNEQHKTSKETLQQLKTKSTKIKQNSKSSLSGTAVQVKVDLMDKNIDDSRKIGQNKRKVKTETEPRKKIKTCSSTLTSISEQINFQSDSDVLEDCENFSEFDLFKWIEDDDARDMDGLLRKSIKKSQKDLNKDLQFDLIQMESEMKNDLQEQKIKNVWNLDTGHKHEDEHSDMIDILDDQTGFLRKVTVTKAIVEKPKPSKDSVSCKYLEKYKENVADIVNHRNRNEIQSYTKKNVKKRTSTKPKKKKILRSSSTTTDEDIMSVHTDSDICDVISIQNEEEDENVIVVVPTQYEENDKDLFRKSIDEKEAAIFAKIYEIDNIEKQTLIDKEKPKTRKKRDVQKLERQIVTRQTNKKQKKNEKKENEGTILVSTKKVNDACTYHLGHHILARYFYKNSWKHYVGSITEIINENQLEKTYRISFYKTVRTKNTLKFTQPKRSDEDCIPANLIIKEIELIQIKENPNEFVLNDDSDDVYFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334743;
- 90% Identity
- iTF_01334727; iTF_00682284; iTF_01334736; iTF_01334737; iTF_01334738; iTF_00682324; iTF_00682325; iTF_00683253; iTF_01334743; iTF_00682323;
- 80% Identity
- iTF_01334737;