Sinc040124.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071647.1:1483318-1484883[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 1.4e+03 0.8 0.5 16 43 88 112 83 113 0.81 2 12 0.7 4.2e+02 2.5 1.5 9 38 110 137 102 143 0.67 3 12 0.0018 1.1 10.8 3.3 12 39 143 167 133 172 0.73 4 12 0.00014 0.087 14.3 0.9 6 44 169 202 165 202 0.88 5 12 0.16 96 4.6 0.1 15 44 205 231 203 231 0.87 6 12 1.6 9.8e+02 1.3 0.7 18 43 238 260 232 261 0.88 7 12 0.0018 1.1 10.8 1.6 15 43 263 288 260 289 0.92 8 12 0.15 90 4.7 1.0 17 43 303 326 296 327 0.79 9 12 0.00067 0.4 12.2 1.2 4 44 320 357 317 357 0.89 10 12 0.0003 0.18 13.3 2.1 16 43 360 384 358 385 0.92 11 12 0.75 4.5e+02 2.4 1.0 18 35 392 406 385 415 0.71 12 12 0.00098 0.59 11.6 8.9 6 39 409 451 404 471 0.83
Sequence Information
- Coding Sequence
- ATGGAGGAGACTGAAAAAGTATTTGTTAAGCAAGAACACTGTGACATTGTTAGTTTCAACATCAAAGTGGAAATTAAACCTTATGACGGTAAGAAAGACACTGCACACACAGATAGCGACTCTACAAAGAAATCCATAATCATTAAAGAAGATAATACAGCTGATATTGATAGGCAATCAGAAACGGAGGACACTGAGGTACAGAAGCCACGACGGCAAATAGAATTTGAAGGCAGTGCATATGTAAATGGTAAAAGGCACCGCCTTAAATGTCCACAGTGTGACACAACATTTAAAAACCGTGCAAATTTGAAAGGGCATCTGAGATTTATCCATGCAACGGAAGATGAGATTGTGGAATGCAAACAATGCTTCCGTATATTCAAATCAGTGATGCATCTTCGCTCACACACAGCCTCTGTTCACGCTGATGTGAAAGAAGTAACATGCAACTATTGCGGTAAAGAATTTCAGAACAAGAAAAAGCTCAACAACCATATTTTCTACACACATCCTTCACCTGAACAAAGTGTCACATGTGAAGTATGCTCAAAGACTTTTCAGACAAAGTATAGACTAAAACTACACATGCGTACTGTACATCCAGAAGGGCAAAATGTAAACTGTGCAGAATGCAAAAAAGAGTTTAAATCAGAAATGCTTTTGCAACGCCACATGAAATGGGCTCATCCTAACGATGGTATGACATACAGATGCCAAGAATGTGGACGAGTACTCCCATCTATACCTTGTTACAAGAAACATCTGAAAAATGTCCATGGATTAGGTAATATCAAATGTGACTTATgtgaaaaagtatttcaaactACGTATACTTTACAAAGGCATATGAAAAACGTACACGAAGGCATAAAAGATGTGAGGAAAGAGTACAAACCTGGTGATATAGAATGTGAACAATGCGGTAAAAAGTTTAGCACAAACACAGCATTGAGTTGGCACTTTGAAAGACTACattctgaaaataaaataagtacagTATGCCAGATATGCTTCAAAGAGTTAGGTGATCACAATGGTTTGAAGAGACATGTAGAAACTGTGCATTCAATGGAGTCTGCAGTGTGCAATATATGTTCAAAGACTTTCAAATCTCAAATGAATTTACAGAGACATATGCGAGTGACTCATGCACCACCAGAAGCCGCTAAAACATGTAGTATATgccaaaaagtatttaaatgttCCATGCATCTAAAGATACATGTATATGCAGTTCATCCTAAAGAAGGAAAGGTGACATGCGAAATCTGTAATAAAGAGTTTTCCTCTAAAAAGTATTTGCTCAAACATGAAAAAACACATAACACAAAAGATTTTCCATGTCACTTATGTGGCAGCTATTTTAAAAGTGTTAATGATGTGAACCGACATATAAAACGAGTTCATATGAAATCAGCAGCGATTGAAAATAGTGATAGGAATTGTCTCAAATGTGGGAGTAGTTTTAAAGACGATACTGAGCTACATTCTCATATAGTGATGTGCGGTAATGACTTAGAACCTAGTGCTTTTGTTAAGGTGGAAGTAGATGTGGACagctga
- Protein Sequence
- MEETEKVFVKQEHCDIVSFNIKVEIKPYDGKKDTAHTDSDSTKKSIIIKEDNTADIDRQSETEDTEVQKPRRQIEFEGSAYVNGKRHRLKCPQCDTTFKNRANLKGHLRFIHATEDEIVECKQCFRIFKSVMHLRSHTASVHADVKEVTCNYCGKEFQNKKKLNNHIFYTHPSPEQSVTCEVCSKTFQTKYRLKLHMRTVHPEGQNVNCAECKKEFKSEMLLQRHMKWAHPNDGMTYRCQECGRVLPSIPCYKKHLKNVHGLGNIKCDLCEKVFQTTYTLQRHMKNVHEGIKDVRKEYKPGDIECEQCGKKFSTNTALSWHFERLHSENKISTVCQICFKELGDHNGLKRHVETVHSMESAVCNICSKTFKSQMNLQRHMRVTHAPPEAAKTCSICQKVFKCSMHLKIHVYAVHPKEGKVTCEICNKEFSSKKYLLKHEKTHNTKDFPCHLCGSYFKSVNDVNRHIKRVHMKSAAIENSDRNCLKCGSSFKDDTELHSHIVMCGNDLEPSAFVKVEVDVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334152; iTF_01331928; iTF_01331915;
- 90% Identity
- iTF_01334152;
- 80% Identity
- iTF_01334152;