Sgig073599.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012564.1:2485190-2486755[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.63 7.4e+02 2.4 0.6 13 43 85 112 82 113 0.86 2 13 0.023 27 7.0 0.9 5 38 109 137 108 143 0.74 3 13 0.33 3.8e+02 3.3 2.7 10 38 141 166 133 172 0.72 4 13 0.00067 0.78 11.9 1.1 7 44 168 202 165 202 0.92 5 13 0.39 4.6e+02 3.1 0.2 15 44 205 231 203 231 0.84 6 13 1.1 1.3e+03 1.6 1.0 17 43 237 260 229 261 0.83 7 13 0.017 19 7.5 7.1 15 43 263 288 251 289 0.86 8 13 0.027 31 6.8 0.5 17 28 303 314 296 319 0.83 9 13 0.00016 0.19 13.9 1.6 4 44 320 357 317 357 0.94 10 13 0.0045 5.2 9.3 4.0 17 43 361 384 359 385 0.93 11 13 2.7 3.1e+03 0.4 2.3 16 28 390 402 384 407 0.79 12 13 0.017 19 7.5 8.0 6 30 409 439 404 471 0.81 13 13 6.3 7.4e+03 -0.8 0.3 19 34 483 495 476 502 0.77
Sequence Information
- Coding Sequence
- ATGGAAGATACCGAAAAAGTGTTCGTGAAGCAAGAATATGGCGGCTTCGGTTTCGACGTCAATGTGAAGATCGAATCTTTGAAAGATGAGGAATACACTCCCCACGAGGACAGCGAGGTTCACACCAAAACGAATATCCATGAGGAGGTTAAAACTCCCGATACAATAGATGAGCAGTCAGAGGTCACAGCGGATGAGGTACAGCAATCGCGGAGGCAAATAGAATTTGAAGGCAGCGCGTACTTGAACGGAAAGAGGAACCGGCTAAAATGCCCGCAGTGCGACACGACATTCAAGAACCGGGCGAACTTGAAAGGCCATCTCAGATATATCCACGCGACGGAAGAGGAGGTGGTCGAGTGCAAACTGTGCTTTAGGACCTTCAAGTCGGTTATGCACTTGCGCTCACACACAGCGTCAGTGCACGCCGATTTGAAGGAAGTGACGTGCACGCGTTGCGGCAAGGAGTTCCAGAACCGGAAGAAGTTGAACAATCACATATTTTACACGCACCCGGAACCGGAGGAGAATGTTATCTGTCACGTGTGCTCGAAGGTATTCCAGACGAAATACAGACTCAAATTGCACTTGCGCACAGTTCATCCTGAAGGGAAGAACGTAAACTGTCCGGAGTGTAAGAAGGAGTTCAAATCTGATATGCTGTTGCAGCGTCACATAAAATGGGCTCACCCCAACGATGGCATGACGTACAGATGTCAGGAGTGCGGCAGAGTGTTACCGTCTATACCTTGCTACAAGAAACATTTGAAGAACGTACACGGCCTGGGCAACATCAAATGTGCGCTGTGCGAGAAAGTCTTCCAAACCAACAACACATTGCAAAGGCATTTGAAAACGGTTCACGAGGGCATAAAGGACGCAAGGAAGGAATATAAAACGGGAGATCTGGAATGCACGCATTGCGGGAAGAAATTCAGTACGAACACAGCCCTGAGCTGGCATTATGAACGGCTACATTCCGACAATAAACTGAGCACAGCGTGCCAGATATGCTTTAAAGAGTTTGGAGACCACAACGGCTTGAAGAGACACCTAGAAACGGTGCATTCGATGGAGCCGGCCACTTGTAACCTCTGCTCGAAGACTTTTAAATCTCACATGAACCTTCAGAGGCACATACGAGTGACTCACGCACCGCCGGAAGCGGCGCAGACATGCAGTATATGTCAAAAGGTCTTCAAATGCTCAATGCATCTAAAGATACATGTGTACGCTGTCCATCCCAAAGAAGGCAAAGTGGCGTGCGACATTTGCAACAAGGAGTTCTCGTCCAAAAAGTATTTGCTGAAACACGAGAAGACCCACAACTCGAAAGACTATCCGTGCCACGTGTGCGGGAATTACTTCAAAAGTGTCAACGATGTTAATCGGCACATTAAACGGGTTCATATGAAAACTAGTGCGATGGAGAACAGTGATAGGAGCTGCCACAAATGTGGTTGCAGTTTTAAAGATGACAGCGAGTTGCTTTCTCATATAGATGTGTGCGGTAACGACGTTGAACCCAGTGCTTATGTTAAAGTCGAAGTTAATGTAGATAGCTAA
- Protein Sequence
- MEDTEKVFVKQEYGGFGFDVNVKIESLKDEEYTPHEDSEVHTKTNIHEEVKTPDTIDEQSEVTADEVQQSRRQIEFEGSAYLNGKRNRLKCPQCDTTFKNRANLKGHLRYIHATEEEVVECKLCFRTFKSVMHLRSHTASVHADLKEVTCTRCGKEFQNRKKLNNHIFYTHPEPEENVICHVCSKVFQTKYRLKLHLRTVHPEGKNVNCPECKKEFKSDMLLQRHIKWAHPNDGMTYRCQECGRVLPSIPCYKKHLKNVHGLGNIKCALCEKVFQTNNTLQRHLKTVHEGIKDARKEYKTGDLECTHCGKKFSTNTALSWHYERLHSDNKLSTACQICFKEFGDHNGLKRHLETVHSMEPATCNLCSKTFKSHMNLQRHIRVTHAPPEAAQTCSICQKVFKCSMHLKIHVYAVHPKEGKVACDICNKEFSSKKYLLKHEKTHNSKDYPCHVCGNYFKSVNDVNRHIKRVHMKTSAMENSDRSCHKCGCSFKDDSELLSHIDVCGNDVEPSAYVKVEVNVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334110;
- 90% Identity
- iTF_01331928;
- 80% Identity
- iTF_01331928;