Basic Information

Insect: Schoenobius gigantellus
Gene Symbol: -
Assembly: GCA_963935595.1
Location: OZ012564.1:2485190-2486755[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.5e-06 0.00039 22.8 0.7 2 23 90 112 89 112 0.96

2 14 0.0025 0.63 12.7 1.8 2 23 120 142 119 142 0.94

3 14 0.00045 0.11 15.0 1.9 2 23 149 171 148 171 0.93

4 14 4e-05 0.01 18.3 1.9 3 23 180 201 178 201 0.97

5 14 4.8e-05 0.012 18.1 0.2 3 23 209 230 207 230 0.95

6 14 0.0034 0.86 12.3 1.0 1 23 237 260 237 260 0.97

7 14 1.6e-05 0.0042 19.6 0.7 2 23 266 288 265 288 0.97

8 14 7.1e-06 0.0018 20.7 1.5 2 23 304 326 303 326 0.95

9 14 0.00078 0.2 14.3 0.8 3 23 335 356 333 356 0.96

10 14 6.7e-06 0.0017 20.8 4.0 2 23 362 384 362 384 0.97

11 14 0.023 5.9 9.7 2.8 2 23 392 414 391 414 0.89

12 14 7.4e-06 0.0019 20.7 1.2 3 23 422 442 421 442 0.98

13 14 0.00033 0.085 15.5 1.0 1 23 447 470 447 470 0.98

14 14 0.00055 0.14 14.8 1.3 2 20 482 500 482 502 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.5e-06	0.00039	22.8	0.7	2	23	90	112	89	112	0.96
2	14	0.0025	0.63	12.7	1.8	2	23	120	142	119	142	0.94
3	14	0.00045	0.11	15.0	1.9	2	23	149	171	148	171	0.93
4	14	4e-05	0.01	18.3	1.9	3	23	180	201	178	201	0.97
5	14	4.8e-05	0.012	18.1	0.2	3	23	209	230	207	230	0.95
6	14	0.0034	0.86	12.3	1.0	1	23	237	260	237	260	0.97
7	14	1.6e-05	0.0042	19.6	0.7	2	23	266	288	265	288	0.97
8	14	7.1e-06	0.0018	20.7	1.5	2	23	304	326	303	326	0.95
9	14	0.00078	0.2	14.3	0.8	3	23	335	356	333	356	0.96
10	14	6.7e-06	0.0017	20.8	4.0	2	23	362	384	362	384	0.97
11	14	0.023	5.9	9.7	2.8	2	23	392	414	391	414	0.89
12	14	7.4e-06	0.0019	20.7	1.2	3	23	422	442	421	442	0.98
13	14	0.00033	0.085	15.5	1.0	1	23	447	470	447	470	0.98
14	14	0.00055	0.14	14.8	1.3	2	20	482	500	482	502	0.93

Sequence Information

Coding Sequence: ATGGAAGATACCGAAAAAGTGTTCGTGAAGCAAGAATATGGCGGCTTCGGTTTCGACGTCAATGTGAAGATCGAATCTTTGAAAGATGAGGAATACACTCCCCACGAGGACAGCGAGGTTCACACCAAAACGAATATCCATGAGGAGGTTAAAACTCCCGATACAATAGATGAGCAGTCAGAGGTCACAGCGGATGAGGTACAGCAATCGCGGAGGCAAATAGAATTTGAAGGCAGCGCGTACTTGAACGGAAAGAGGAACCGGCTAAAATGCCCGCAGTGCGACACGACATTCAAGAACCGGGCGAACTTGAAAGGCCATCTCAGATATATCCACGCGACGGAAGAGGAGGTGGTCGAGTGCAAACTGTGCTTTAGGACCTTCAAGTCGGTTATGCACTTGCGCTCACACACAGCGTCAGTGCACGCCGATTTGAAGGAAGTGACGTGCACGCGTTGCGGCAAGGAGTTCCAGAACCGGAAGAAGTTGAACAATCACATATTTTACACGCACCCGGAACCGGAGGAGAATGTTATCTGTCACGTGTGCTCGAAGGTATTCCAGACGAAATACAGACTCAAATTGCACTTGCGCACAGTTCATCCTGAAGGGAAGAACGTAAACTGTCCGGAGTGTAAGAAGGAGTTCAAATCTGATATGCTGTTGCAGCGTCACATAAAATGGGCTCACCCCAACGATGGCATGACGTACAGATGTCAGGAGTGCGGCAGAGTGTTACCGTCTATACCTTGCTACAAGAAACATTTGAAGAACGTACACGGCCTGGGCAACATCAAATGTGCGCTGTGCGAGAAAGTCTTCCAAACCAACAACACATTGCAAAGGCATTTGAAAACGGTTCACGAGGGCATAAAGGACGCAAGGAAGGAATATAAAACGGGAGATCTGGAATGCACGCATTGCGGGAAGAAATTCAGTACGAACACAGCCCTGAGCTGGCATTATGAACGGCTACATTCCGACAATAAACTGAGCACAGCGTGCCAGATATGCTTTAAAGAGTTTGGAGACCACAACGGCTTGAAGAGACACCTAGAAACGGTGCATTCGATGGAGCCGGCCACTTGTAACCTCTGCTCGAAGACTTTTAAATCTCACATGAACCTTCAGAGGCACATACGAGTGACTCACGCACCGCCGGAAGCGGCGCAGACATGCAGTATATGTCAAAAGGTCTTCAAATGCTCAATGCATCTAAAGATACATGTGTACGCTGTCCATCCCAAAGAAGGCAAAGTGGCGTGCGACATTTGCAACAAGGAGTTCTCGTCCAAAAAGTATTTGCTGAAACACGAGAAGACCCACAACTCGAAAGACTATCCGTGCCACGTGTGCGGGAATTACTTCAAAAGTGTCAACGATGTTAATCGGCACATTAAACGGGTTCATATGAAAACTAGTGCGATGGAGAACAGTGATAGGAGCTGCCACAAATGTGGTTGCAGTTTTAAAGATGACAGCGAGTTGCTTTCTCATATAGATGTGTGCGGTAACGACGTTGAACCCAGTGCTTATGTTAAAGTCGAAGTTAATGTAGATAGCTAA
Protein Sequence: MEDTEKVFVKQEYGGFGFDVNVKIESLKDEEYTPHEDSEVHTKTNIHEEVKTPDTIDEQSEVTADEVQQSRRQIEFEGSAYLNGKRNRLKCPQCDTTFKNRANLKGHLRYIHATEEEVVECKLCFRTFKSVMHLRSHTASVHADLKEVTCTRCGKEFQNRKKLNNHIFYTHPEPEENVICHVCSKVFQTKYRLKLHLRTVHPEGKNVNCPECKKEFKSDMLLQRHIKWAHPNDGMTYRCQECGRVLPSIPCYKKHLKNVHGLGNIKCALCEKVFQTNNTLQRHLKTVHEGIKDARKEYKTGDLECTHCGKKFSTNTALSWHYERLHSDNKLSTACQICFKEFGDHNGLKRHLETVHSMEPATCNLCSKTFKSHMNLQRHIRVTHAPPEAAQTCSICQKVFKCSMHLKIHVYAVHPKEGKVACDICNKEFSSKKYLLKHEKTHNSKDYPCHVCGNYFKSVNDVNRHIKRVHMKTSAMENSDRSCHKCGCSFKDDSELLSHIDVCGNDVEPSAYVKVEVNVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01334110;
90% Identity: iTF_01331915;
80% Identity: iTF_01331915;