Sinc011102.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- Mblk-1_1
- Assembly
- GCA_036419045.1
- Location
- CM071630.1:4915828-4946105[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-14 2.2e-11 44.7 0.0 1 40 165 205 165 208 0.93 2 2 4.7e-18 2.1e-15 57.6 0.0 1 43 367 410 367 412 0.95
Sequence Information
- Coding Sequence
- ATGAAAAGCCTTATCTCCCCGCCAAACAAAAGACCGGCTCCAAATAAGGTTGTGCTTATGTTAAGTCCAGCGTCGGAGTCAGACAGCAGTTCAGTGTCGGGCGCCAAGTCTCCCGCTGGTGCGCCACCGCTGCTGCAGCACCTACTGCAACTCCAGTTGCAGGCGCAGAGTCCGCAAGCTATAGCTCAGTTCCAGCAGATGGTGGCGGCGCTGGCGACGCTGGGGTCGGGGCTGGTTCCGCCCGCGGTGCTCTCCCAGGTCTGGCTGATGCAGCGGCTGGCGCAGAACAGGCCAGTGCCTGATAGgcTACCAGAGGCTGGCGAGAAGCCACCAACTCCGGCATCCCCGAGCCTGGCCGAGCAGCCGCTGGACCTCAGCGCCAAGTCTACCTCCAGTACCAGCGGCACCCCGCCACCTGACTCCAAGATCCTGGATAACAGGCTGAAGCGAAGTGCTCTCGACGTAAGCAACAGCGTGTCCCGCCGAGCGTACACAGAGGATGAACTGCAGTCGGCGCTGCGCGATATTCAATCCGGGCGGCTAGGTACCCGGCGCGCCGCCGTCGTATACGGAATCCCGCGCTCGACGCTACGCAACAAGGTCAGCAAAGTCGGGCCAGCCGACCCTCGCGACTCCGAGCCAGACAGCGACTCCGAGAGACCCGAATCCCCGCCGTCGGTCATACTTAAAATACCAACCTTTCCCCCACCGGACGAAAAGAGCTCGTCCCCCGCCACACCTGTAACACCCGTAACACCTATAACCCCGATCATACCTCCGCCCCAACCTCCTCTAAATCCACCACCCTTACCCACGTTCTTCGCGGACCCTCCTGCTAACCAACACCTGTTCACGTCCATCAACGATGTCATAGTCCGAAGCATCAGCCAAAAGTTCCAACAGCTGCCCGACCGGCCGCACCAGCCCGCCGACCTCCCATACATGAGGGCGCCGGACCGGCACGTCTCCGTCATCAAGACGCCGCCGGACAATCAGCGCAACTACCCGGTGCCGAGCAACTCGAAGGCGACTAACAACGGCCAGCCGAACGCCGGCGGCAAGGGCACGCGGCCCAAGCGCGGGAAGTATCGCAACTACGACCGGGACAGCCTCGTGGAGGCGGTGAAGGCAGTGCAGCGCGGCGAGATGTCGGTGCACCGCGCTGGCTCCTACTACGGCGTGCCGCACTCCACGCTGGAGTACAAGGTGAAGGAGCGGCACCTCATGCGGCCGCGGAAGCGCGAGCCGAAGCCGCCGCAGGAGCCGAAGCCGCCGCCCAAGCCGCAGCCGAAGCCGGTGCCACCGACAAAGCCGTTCTCGAACGGGCTCAACGGGCCCGAGGCGCCCGCGTACCCGCCTGGCTACCCGTTCTGGCCCGGCGCCGCGTTCCCACCGCCCGCGCCGGACTTGTACGCCTCGCACATGATGCGTCGGCTGCGCGAGGAGGCGCCGCCGCCGGCTAATGGCTCGTTCCTGGAGGGCATCATTCGGTCGAGTCTGGAACGACCGGGCGCGGCGCTGTTGCAGCGGCTGACGGAGCCGCGCGCGGCAGAGGGTGCGCTGTTGCGGCGGCTGGCGGAGGACGAGCCGGCGCCTCGGCGCGCGCGCCTCGACGCCTCGGACCGCGCCTTGGCCGCCGACATGCGCGAGGCCGTGCAGCGGCTGCGCGCCGATAAGCTGCGgcccgccggcgccggcgccggtgcCAGCGCCAGCGGCGGCACCGGCGCCAACGGCTCGGCCGTGGCCGCGGCCACCGCCGATGCCGAGCGCGCGCCCACGCCGCCCGCCGCCCCGCGATCTCCGCACTCTTGtgataatattatgtaa
- Protein Sequence
- MKSLISPPNKRPAPNKVVLMLSPASESDSSSVSGAKSPAGAPPLLQHLLQLQLQAQSPQAIAQFQQMVAALATLGSGLVPPAVLSQVWLMQRLAQNRPVPDRLPEAGEKPPTPASPSLAEQPLDLSAKSTSSTSGTPPPDSKILDNRLKRSALDVSNSVSRRAYTEDELQSALRDIQSGRLGTRRAAVVYGIPRSTLRNKVSKVGPADPRDSEPDSDSERPESPPSVILKIPTFPPPDEKSSSPATPVTPVTPITPIIPPPQPPLNPPPLPTFFADPPANQHLFTSINDVIVRSISQKFQQLPDRPHQPADLPYMRAPDRHVSVIKTPPDNQRNYPVPSNSKATNNGQPNAGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPPQEPKPPPKPQPKPVPPTKPFSNGLNGPEAPAYPPGYPFWPGAAFPPPAPDLYASHMMRRLREEAPPPANGSFLEGIIRSSLERPGAALLQRLTEPRAAEGALLRRLAEDEPAPRRARLDASDRALAADMREAVQRLRADKLRPAGAGAGASASGGTGANGSAVAAATADAERAPTPPAAPRSPHSCDNIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682281;
- 90% Identity
- iTF_01331364;
- 80% Identity
- -