Sinc037686.2
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- retn_1
- Assembly
- GCA_036419045.1
- Location
- CM071645.1:7890998-7901301[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-20 7.8e-17 62.9 0.0 9 89 70 148 65 148 0.94 2 2 6.7 3.4e+04 -3.2 0.0 25 38 279 292 241 293 0.62
Sequence Information
- Coding Sequence
- ATGTTCCAGCGGTCTCTAAATAACGTGAAATACTGCGCAAGCGCGCGCACGCCGCTAAGCGCACGCGCATCGAATCGCGCGTTTTCCGCCGCCGGCGCGGGTCCGCGTTTTGTGGAAATCGTTATTGGGGTGATTGCTTTCATAAACAATAGCTTTTGTGCATCGGTTCTTGTAAGTTGCTTGCTATTTTACCGGATAACGGTTGGCTTGGCTGCATTTGGAACGAGTTTAGGAACACCAATAAACCGGCTACCTATAATGGCTAAGTCTGTTCTTGACCTATACGAGCTGTATAATTTGGTCATAGCCAGAGGAGGTCTCGTCGAGGTCATCAATAAAAAGCTTTGGCAAGAGATCATCAAAGGCCTCAGACTGCCTTCTTCCATCACGTCTGCTGCATTCACACTGCGCACACAGTATATGAAATACTTGTACGACTACGAGTGTGAGAAGAAGAATTTGTCGACCAGAAGTGAACTGGATGCGGCCATCGAAGGGAACAAGAGGGAGGGTAGGCGAGCCTCGGGCCAGTACGATGCGCAGGCGGCTCTAGCAATGCCGCCGCTGAGCCGAGGCGTGCCGGCGTCGCTGGCGCAGCTGTCGCATATGCAACCACTATCGCTTTCGCTAGGCGGTGGCGTGCCGGTGCCGCGCCTGCCTCCGCTGCCGCCGCACGCGCCGCACATCTCTCAACACGACATAGAGTATCGAGTCAGAGAATACATGAAAATGATCCAACAGCAGCGGGAGCTTATGAGGAATGGTTCGGAATCGCCGCCCAATTCCAACGGGCCGGCGCCCGTAATGTCGCCGCGCGATGCGGCTGCGCTAAGCGCCATCGACGTCTCCCGTCTCACGCTGTGGTcgctttataacaataataacaacagcCCTCAGCCGGAGCTGGAGCCACAGCGGGAGGCGCTGAATCTAAGCGAGAGCCCCAACTCGAGCGgtagcggcggcggcggcagcggtAAGCGCGACCGCGAGGCGTGCCGCTCGCCGCTGCCGCCGGCCAAGCGGCGCACGCCGCGGCCGCCGTCGCCGCGCGCGCCCTCGCCCTCGCCGCCGCGCCCGGTCAACGGGAACGCGGTCAACGGGGCCGCTTTCAAGATCACCACTAGAGgTGATGCAAGCACTGGCGACCAGCAGCTTGTCGTCTCAATAGAGTTGAACGGCGTCACATATGAAGGTGTCCTATTTCCATCACAAAACGAAAACGGTCAGAACGGACACAGGCGAATAGTATCTTAA
- Protein Sequence
- MFQRSLNNVKYCASARTPLSARASNRAFSAAGAGPRFVEIVIGVIAFINNSFCASVLVSCLLFYRITVGLAAFGTSLGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLSRGVPASLAQLSHMQPLSLSLGGGVPVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPNSNGPAPVMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPELEPQREALNLSESPNSSGSGGGGSGKRDREACRSPLPPAKRRTPRPPSPRAPSPSPPRPVNGNAVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNENGQNGHRRIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00006076;
- 80% Identity
- -