Scos019669.2
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- retn
- Assembly
- GCA_905475405.1
- Location
- FR997837.1:13720600-13730321[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-20 4.3e-16 60.4 0.0 17 89 57 127 45 127 0.94 2 2 4.5 2.3e+04 -2.9 0.0 25 38 257 270 218 271 0.54
Sequence Information
- Coding Sequence
- ATGGCGAAGCTGGCAAACAAGCCTGTGGAACAAACGGCCTGTTTCCGTGGCCACACGGGCTGTGCTAAAtccggcctactaatactaaccACTCGTCGTAAAGCCACGATCAGACGCGCTTTTGCAACGCGTAAATCATTGATCGTGCGATGCGATGCCATTCGGGTCGGAACACCTATCAATCGATTACCAATAATGGCTAAGTCTGTACTAGACTTGTACGAGCTGTATAACCTGGTGATTGCACGCGGAGGACTCGTCGAAGTGATCAACAAGAAGCTCTGGCAAGAAATCATTAAGGGACTCCGGCTACCATCCTCTATCACATCGGCTGCTTTTACACTACGGACACAatatatGAAATACCTGTATGACTACGAGTGTGAAAAGAAGAACTTATCAACAAGGAGTGAGTTGGATGCGGCAATCGAAGGTAACAAGCGGGAAGGACGCCGCGCCTCGGGACAGTATGATGCACAAGCTGCGTTGGCTATGCCGTCGTTGAACCGTGGCGTGCCCGCTTCTCTAGCCCAGCTCTCTCAACACATGCAGCCACTGTCATTGTCTCTGGGTGGCGTGGCACCTCGCCTACCGCCATTGCCACCACACGCGCCACATCTAGCACAACATGACATTGAGTACAGAGTCAGGGAGTACATGAAGATGATACAACAGCAACGCGAGCTTATGAGAAATGGTTCAGAATCACCACCCAGCATGAACGGTCCAGCACCGATGATGTCACCGCGGGACGCAGCCGCTCTAAGTGCCATAGACGTGTCACGACTCACACTCTGGTCACTCTACaacaacaataacaataacagcCCACAACCTGATCTGGAACCACAGagAGAGGCATTAAACCTGAGCGAGAGTCCGAACTCTAGCACTTCGGGAGGCAAGCGAGAGGCGTGCCGCTCCCCCGCGCCGCCAGCCAAGCGCCGCACCCCTCGCCCGCCGTCCCCCCGGGCCTCGCCGCCCTCCCCGCCAGCACCTGCGCCGACAGCTCGAGCTCGGCTGGAACCAGCTTCACCCCCTCATGGAATCAACGGACCTGCCAATGGTGTTAATGGTGCAGCTTTCAAGATTACTACTAGAGGAGATGCCAGCACAGGTGATCAACAACTAGTGGTATCCATAGAACTGAACGGCGTAACCTACGAAGGAGTATTATTCCCAGCCAACAATTCACAGAACGGACATAGGCAAATGGTTTCTTAA
- Protein Sequence
- MAKLANKPVEQTACFRGHTGCAKSGLLILTTRRKATIRRAFATRKSLIVRCDAIRVGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPSLNRGVPASLAQLSQHMQPLSLSLGGVAPRLPPLPPHAPHLAQHDIEYRVREYMKMIQQQRELMRNGSESPPSMNGPAPMMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQREALNLSESPNSSTSGGKREACRSPAPPAKRRTPRPPSPRASPPSPPAPAPTARARLEPASPPHGINGPANGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPANNSQNGHRQMVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636054;
- 90% Identity
- iTF_00677326;
- 80% Identity
- -