Sgig064381.2
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- retn
- Assembly
- GCA_963935595.1
- Location
- OZ012559.1:11805948-11818441[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-21 1.7e-17 65.7 0.0 4 89 12 95 9 95 0.94 2 2 6.1 5e+04 -3.1 0.0 25 38 228 241 189 243 0.68
Sequence Information
- Coding Sequence
- ATGCAGAAGACGTGCGAAAGTGTTCAGTCTCTTCAGTCTCTTCAGTCTCTCGACACTCTTCACTTCGTTTCAGGAACACCAATAAACCGGCTTCCTATAATGGCTAAGTCTGTTCTCGACCTATACGAGTTGTACAATTTGGTCATAGCCAGGGGAGGTCTCGTCGAAGTTATCAACAAGAAGCTTTGGCAGGAGATTATCAAAGGCCTCAGATTGCCCTCTTCCATCACATCTGCTGCTTTCACACTTCGCACACAGTACATGAAGTATTTGTACGATTACGAGTGTGAGAAAAAGAACCTATCGACCAGAAGTGAGTTGGACGCGGCCATCGAAGGGAACAAGAGGGAGGGCAGGCGAGCCTCTGGCCAGTACGACGCACAGGCGGCTTTAGCAATGCCCCCGCTGAGCCGCGGCGTGCCGGCGTCGCTGGCGCAGCTCTCGCAGCACATGCAGCCGCTGTCGCTGTCGCTGGGCGGCGGCGTGGGCGGCGTGCCGCGCctgccgccgctgccgccgcaCGCGCCGCACATCGCGCAGCACGACATCGAGTACCGGGTCAGGGAGTACATGAAGATGATCCAGCAGCAGCGGGAGCTCATAAGGAACGGCTCAGAATCCCCGCCGAATTCCAATGGACCAGCTCCTATAATGTCTCCCCGCGACGCGGCCGCTCTCAGTGCCATCGACGTCTCCCGTCTGACCCTCTGGTCTCTctataacaacaacaacaacaacagcccGCAGCCAGAACTGGAGCCACAACGCGAGGCCCTGAACCTGAGCGAGAGCCCCAACTcgagcggcagcggcggcggcaaGCGCGAGGCGTGCCGCTCGCCGCTGCCGCCGGCCAAGCGGCGCACGCCGCGGCCGCCGTCGCCGCGCGCGCCCTCGCCGCCGCGCGCGCCCCTCAACGGCGCGCCGCCCGCCAACGGGGTCAACGGGGCCGCCTTCAAGATCACGACTAGAGGTGATGCAAGCACTGGCGACCAGCAGCTCGTCGTTTCGATAGAGCTGAACGGCGTCACATACGAAGGTGTCCTATTTCCATCACAAAACGGAAACGGCCAAAACGGGCACAGGCAAATGGTGTCTTAA
- Protein Sequence
- MQKTCESVQSLQSLQSLDTLHFVSGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLSRGVPASLAQLSQHMQPLSLSLGGGVGGVPRLPPLPPHAPHIAQHDIEYRVREYMKMIQQQRELIRNGSESPPNSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNNSPQPELEPQREALNLSESPNSSGSGGGKREACRSPLPPAKRRTPRPPSPRAPSPPRAPLNGAPPANGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00006076;
- 80% Identity
- -