Spec002710.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638202.1:29911355-29912825[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.18 6.9e+02 0.6 0.1 26 37 127 138 117 150 0.72 2 5 0.085 3.3e+02 1.6 0.0 22 45 153 176 144 183 0.79 3 5 0.0012 4.7 7.6 0.1 22 46 181 205 175 207 0.88 4 5 0.00012 0.48 10.7 0.2 21 46 208 233 204 235 0.92 5 5 0.0012 4.6 7.6 0.0 21 53 236 268 234 269 0.87
Sequence Information
- Coding Sequence
- ATGGAAAGCGCCTGCGAGAGGGATTTTCACAGAAGTTTAGAGCCTGACGTGATCATTAAAGATGTGGCCAGCGACGAAGATGATGAAGTCGATTTGAGCAAGTCAAATGATAGTTCCGACGGCCGCAGTTCTCACCCGTCCGCATCGCCCAGGAGCCCGCTAATGGGGTCTATCGGCCCCGACATATCCATAATTCCCATAATCCGGAAGCCCCAAATCAAAATAAGACTGTTCAAAAAAGAATACTCCCCCGCCAAGGACGACACGAAAGTACAAAGTATCTCTCGATCTCCTCGGACTACCGTAAGACTGGTATCGAAAGACGAAGCGGAAAGCGCCGGCGACACTTACGCCCGTCGTAAATCCCTCCCGTTAGAGAAATGTCCCGTATGTAAAAAGTTCTTTCGTCGAATGAAGACGCATCTGTTGAAACACGAGCACGCCAACCGCAACCCCGACGATCCCCTCACCTGCACCTTCTGCATGAAAGGTTTCAACACCCAAAGTAACCTGTTGATCCACATGAGGACGCATACGGGCGACAAACCGTACATATGCGATATTTGCCAGAAGGGTTTTGCGCAATCCTGCAACTTGGTCAATCACATGCGAATCCATACCGGCGAACGGCCGTTCAAGTGTCCTCATTGCGAGAGAGCCTTCACGCAATCGGGCAACTTGAACAATCACATTCGGTTGCATACGGACGAGAAACCGttcaaatgtcacttttgCGACAAGGCCTTTGTGCAATCGGGCAATCTGAATTCGCATATTAGAAACAATCATAAGATCGAGGTGGGCGTGAGAGGCGAGGGGAAAGACGAGGAGGTGGCCGAGTTCAAATGCTAG
- Protein Sequence
- MESACERDFHRSLEPDVIIKDVASDEDDEVDLSKSNDSSDGRSSHPSASPRSPLMGSIGPDISIIPIIRKPQIKIRLFKKEYSPAKDDTKVQSISRSPRTTVRLVSKDEAESAGDTYARRKSLPLEKCPVCKKFFRRMKTHLLKHEHANRNPDDPLTCTFCMKGFNTQSNLLIHMRTHTGDKPYICDICQKGFAQSCNLVNHMRIHTGERPFKCPHCERAFTQSGNLNNHIRLHTDEKPFKCHFCDKAFVQSGNLNSHIRNNHKIEVGVRGEGKDEEVAEFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01330098; iTF_01283733; iTF_01283927;
- 90% Identity
- iTF_01330098; iTF_01283733; iTF_01283927;
- 80% Identity
- iTF_01330098;