Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: -
Assembly: GCA_951805265.1
Location: OX638207.1:9096015-9100288[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.74 2.9e+03 -1.4 0.1 20 31 220 231 214 245 0.75

2 16 0.0018 6.9 7.0 0.3 19 47 246 273 228 281 0.80

3 16 0.5 2e+03 -0.8 0.0 18 43 273 298 272 303 0.78

4 16 0.0022 8.6 6.7 0.0 21 48 304 330 297 337 0.84

5 16 0.71 2.8e+03 -1.3 0.0 20 49 333 361 329 364 0.84

6 16 0.00098 3.9 7.8 0.0 21 46 417 442 415 447 0.91

7 16 0.016 65 3.9 0.1 21 44 473 496 468 503 0.87

8 16 0.094 3.7e+02 1.5 0.9 25 47 629 651 616 656 0.75

9 16 0.03 1.2e+02 3.0 0.5 21 48 653 679 648 686 0.86

10 16 1.3 5.1e+03 -2.2 0.1 23 45 713 735 706 744 0.71

11 16 1.3 5.2e+03 -2.2 0.0 21 43 800 822 792 827 0.76

12 16 0.0069 27 5.1 0.1 21 44 828 851 815 857 0.89

13 16 0.018 72 3.8 0.0 21 47 884 910 878 916 0.88

14 16 0.054 2.1e+02 2.2 0.0 17 43 914 941 909 948 0.79

15 16 8.4e-05 0.33 11.2 0.0 21 46 953 978 944 986 0.83

16 16 0.13 5e+02 1.1 0.1 26 44 992 1010 989 1014 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.74	2.9e+03	-1.4	0.1	20	31	220	231	214	245	0.75
2	16	0.0018	6.9	7.0	0.3	19	47	246	273	228	281	0.80
3	16	0.5	2e+03	-0.8	0.0	18	43	273	298	272	303	0.78
4	16	0.0022	8.6	6.7	0.0	21	48	304	330	297	337	0.84
5	16	0.71	2.8e+03	-1.3	0.0	20	49	333	361	329	364	0.84
6	16	0.00098	3.9	7.8	0.0	21	46	417	442	415	447	0.91
7	16	0.016	65	3.9	0.1	21	44	473	496	468	503	0.87
8	16	0.094	3.7e+02	1.5	0.9	25	47	629	651	616	656	0.75
9	16	0.03	1.2e+02	3.0	0.5	21	48	653	679	648	686	0.86
10	16	1.3	5.1e+03	-2.2	0.1	23	45	713	735	706	744	0.71
11	16	1.3	5.2e+03	-2.2	0.0	21	43	800	822	792	827	0.76
12	16	0.0069	27	5.1	0.1	21	44	828	851	815	857	0.89
13	16	0.018	72	3.8	0.0	21	47	884	910	878	916	0.88
14	16	0.054	2.1e+02	2.2	0.0	17	43	914	941	909	948	0.79
15	16	8.4e-05	0.33	11.2	0.0	21	46	953	978	944	986	0.83
16	16	0.13	5e+02	1.1	0.1	26	44	992	1010	989	1014	0.89

Sequence Information

Coding Sequence: ATGGAGAGACCAGGTGTGGAGAACTTCGCACTCATAACCACAGCCGATTTCGACAGGATTTGTAGATGTTGTCTATCAACAGGCAGCCTACATAACATATTTGAGTATTCCTCCaacaagaaaactttttttgaccACTATAAAGCCTTCTGTGCTATTGAGGTGAAACCTGACGACAATCTTCCTCAAAGTATATGCGAACAGTGTGTGACCAAGCTAGTCTTCATGTATGACTTCAAAAACAAGTGCGCCAGGTCAGAGAAGCTGTTAAAAGAATTATTAGCGACGATCGGCAAAGCTCATATTAAAGATGAAAATCATGGAGAGGAAGCCACTCACAATATTGACATAAAAGAAGAGAATTGCGAAAGTGAGGCAAATAGTTCCACTTTCATGGACAATATTGATATAAATGAGAATTTTCATATTGCTGAAATTGATAAgtttaaattagaaaacgaTTGCGATGTTGATGTAAAAGCAGAAAGTTACACTTGTGAGTTAATGGTCAATGCTGAGCTTGAATGTGGAAAGTCTATCACAAGTCAAGAGGTAGAAGTGCCAAAAACTGCCAAAAAGCGGAGTTGGTTATGTTGCCAAGAAACCTTCACTACTTACCTTAGTTTCATTAGACACTATAAAAGAATGAACCATCAAAAATCAGACAAACATCAAAAGTGTCCAGTTTGTGATAAAAGTTTTCATGGACATGGAATCAGGCAACATATGAGAACCCACACTAAAGAAAAACCGTATATTTGCAAATTCTGCTTTAAGCAGTTTAGTTTATCAGGTAACTTAAGTCGTCACATAAAGAGACACACAGGGGAGAGACCTCATGTTTGTGATGTATGTGGAAAAGGTTTTATCCAAGCTCACTCCTTGGTGAATCACAAACGTACCCACACAGGTGAAAAACCTTTCCCTTGCCCTGAGTGCGACAAGAAATTTGTACAATCCAAAACCCTTCAAACGCACTTAAAGAAGCACCAACTCAAATCGGGACGTCCATTGGAGTGTGAGACATGTAGAAAAGTATTTAGTACAAAATACGTGTTGCAAAATCACATGCTCAGACATGGAAAAAAGTCTTTTCTGTGCAGTCATTGTGGTAAAAGTTTTGCGACTAACGGAGGCTTAAGTTCGCATTTTAAAGTTCACACCGGAGTGAAATCGTACGAGTGTGAGTCTTGTGGCAAACGTTTTGCGAATTTGGGAACCTTGAACTCGCATATTCTGCTTCACACTGGGGAAAAACCGTTTAGTTGTGAGGTTTGTTCGAAGAGTTTCGCCCAAAAGGGGAATTTACGTCTTCACTTGAGAATGCACAGGGGAGAGAAACGTTACAGCTGTTCGTTATGCACGAAATCGTTTTTGTTGCGAAGTGCCTTGACGGTACATGTGAGGATGCACACTGGGGAAAGACCGTATGTTTGTGACGTTTGTTCTAAAGGGTTTCATTCATCGAGCAACTTAAAACAGCACAAAAGAAGGCATAATACAGCAACTAACACCGAAAATAATCTTCGGGGCAAAGATGAAACTTTACGAGGCTCTGTCAACACCAGTATTGAAGACAGCAAATTATCTGAAACTCGTGGAAAGGGTTCAGATAATGGTGACAATATAAAAGATACATTATCAGTAGATGAAGGTGACAAACTGAAAGAAACGAAGAGATTGAAGTCAAAAACGTACACCTGTTCTTGCAAAGCTTCATTTACCAGCCATTTGAAATACTTGAAGCACCGCAAAGAACTCAACCATTGTTACCGGCCTAAAACGGCGAAACTTAGAATTAAGCAGTGCAGTTGTGGTTTAACTTTCGCtgatcaaacaaaatttttgaaacaccgCAGAGAATCGAAACACTTGCAGCGTCAGCACTCCTGCATCTATTGCAGTAAAAAGTTCAAGAGTAGCCAACATTTAAAAAGACACCTGCGCACCCACACGAAAGAAAAGCCCTATCCGTGCCAAGTATGCTCGAAACAATTCCCCACCAACTACAATTTACAAAGACACATGATGAGGCACACAGGCGAACGACCTCACGTTTGCGAGTTCTGCGGCAAAGGCTTCATAGAAATCAGCGGATTGAAGGCCCACTTACCGAGCCACACCGATGCCGCCCCCGAGCCTCCAATTTGCGGCGTATGCGGTCAACAATTTCGCTCGCAATCCTCGTACACGCAGCATCTGAAACGGCACGAAACCGCTTCGAATCCGGGACTGACGCGGAGCCATCTGTGCGATGCTTGCGGCAAATCCTTCGATTCGAAAGCGTACTTGTTGCAGCATTTGATCACGCACGGCGAGAAGAAATTTTCGTGCGACAAGTGCGAGAAACGGTTCTACGCCAGAGGAGCTCTGGAGTCTCATCACCGAACGCATTCGGGGGAGAAACCGTACGTTTGCGGCTACTGTCAGAAGTCGTTCACGCAACCCGGTTCTTTGAAAATTCACACGTACATTCACACCGGCGAAAAGCCGTTCAGTTGCAACATTTGCTCGAAACGTTTCACGCAATCGACCCATTTGAAGTACCATATGGTTTCGCATACCGGGGAACGGGCGTACAGTTGCCCATATTGCGATGACGCCTTTTCCTTCAAGTGCAATCTCACTATTCACATCAGGAAGCACACCGGGGAAAATCCGTACGAATGTGAGGTTTGCGGGGAAGGGTTTCGGGCCTCCGATAAATTGAAGAAGCATCAACGACTTCACCAGAATCATTCCAAAAGTGAATTGGACCAAAAACCGTTTGTTTGTGACGTTTGTTCTAAAGGGTTTAGGAAGTCGAATCATTTAAGTAGTCATAAAAGGACTCATGAAGAGGTTGATAGGGAAGTGGGGGCGAAACCGTTTGAGTgtgaaatttgtttcaaaggATTCAAGGTGCTCAGGAATTTGAGGCGGCACGAGAAGATTCACGAGGACACCAAAAATAACGTTGATTTGAAGTCTTATAAATGCGAGGTGTGTTCGAAAGGGTTTAGGACCCCCAGTAACTTGAAGAGACATGCCAGAGTTCACGGAAAAAAAGACAATACAGAAGTTTTGGTGTAA
Protein Sequence: MERPGVENFALITTADFDRICRCCLSTGSLHNIFEYSSNKKTFFDHYKAFCAIEVKPDDNLPQSICEQCVTKLVFMYDFKNKCARSEKLLKELLATIGKAHIKDENHGEEATHNIDIKEENCESEANSSTFMDNIDINENFHIAEIDKFKLENDCDVDVKAESYTCELMVNAELECGKSITSQEVEVPKTAKKRSWLCCQETFTTYLSFIRHYKRMNHQKSDKHQKCPVCDKSFHGHGIRQHMRTHTKEKPYICKFCFKQFSLSGNLSRHIKRHTGERPHVCDVCGKGFIQAHSLVNHKRTHTGEKPFPCPECDKKFVQSKTLQTHLKKHQLKSGRPLECETCRKVFSTKYVLQNHMLRHGKKSFLCSHCGKSFATNGGLSSHFKVHTGVKSYECESCGKRFANLGTLNSHILLHTGEKPFSCEVCSKSFAQKGNLRLHLRMHRGEKRYSCSLCTKSFLLRSALTVHVRMHTGERPYVCDVCSKGFHSSSNLKQHKRRHNTATNTENNLRGKDETLRGSVNTSIEDSKLSETRGKGSDNGDNIKDTLSVDEGDKLKETKRLKSKTYTCSCKASFTSHLKYLKHRKELNHCYRPKTAKLRIKQCSCGLTFADQTKFLKHRRESKHLQRQHSCIYCSKKFKSSQHLKRHLRTHTKEKPYPCQVCSKQFPTNYNLQRHMMRHTGERPHVCEFCGKGFIEISGLKAHLPSHTDAAPEPPICGVCGQQFRSQSSYTQHLKRHETASNPGLTRSHLCDACGKSFDSKAYLLQHLITHGEKKFSCDKCEKRFYARGALESHHRTHSGEKPYVCGYCQKSFTQPGSLKIHTYIHTGEKPFSCNICSKRFTQSTHLKYHMVSHTGERAYSCPYCDDAFSFKCNLTIHIRKHTGENPYECEVCGEGFRASDKLKKHQRLHQNHSKSELDQKPFVCDVCSKGFRKSNHLSSHKRTHEEVDREVGAKPFECEICFKGFKVLRNLRRHEKIHEDTKNNVDLKSYKCEVCSKGFRTPSNLKRHARVHGKKDNTEVLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01329973;
90% Identity: iTF_01329973;
80% Identity: iTF_01329973;