Basic Information

Insect: Schizaphis graminum
Gene Symbol: prdm10
Assembly: GCA_003264975.1
Location: QEWZ01001497.1:114152-190234[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.15 15 6.8 0.2 3 23 622 642 620 642 0.94

2 11 0.049 4.8 8.4 0.4 2 23 657 678 656 678 0.96

3 11 0.00062 0.061 14.3 2.4 1 23 692 714 692 714 0.97

4 11 0.016 1.5 9.9 3.4 1 23 722 744 722 744 0.97

5 11 0.0028 0.27 12.3 0.3 1 23 750 772 750 772 0.96

6 11 0.0021 0.2 12.7 2.0 1 23 778 801 778 802 0.96

7 11 0.00019 0.018 16.0 1.2 3 23 808 828 806 828 0.98

8 11 6.4e-06 0.00062 20.6 1.8 1 23 834 857 834 857 0.95

9 11 0.2 19 6.5 0.5 1 23 897 920 897 920 0.93

10 11 0.0015 0.14 13.2 2.1 1 23 942 965 942 965 0.97

11 11 0.13 12 7.1 4.9 1 23 1002 1024 1002 1025 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.15	15	6.8	0.2	3	23	622	642	620	642	0.94
2	11	0.049	4.8	8.4	0.4	2	23	657	678	656	678	0.96
3	11	0.00062	0.061	14.3	2.4	1	23	692	714	692	714	0.97
4	11	0.016	1.5	9.9	3.4	1	23	722	744	722	744	0.97
5	11	0.0028	0.27	12.3	0.3	1	23	750	772	750	772	0.96
6	11	0.0021	0.2	12.7	2.0	1	23	778	801	778	802	0.96
7	11	0.00019	0.018	16.0	1.2	3	23	808	828	806	828	0.98
8	11	6.4e-06	0.00062	20.6	1.8	1	23	834	857	834	857	0.95
9	11	0.2	19	6.5	0.5	1	23	897	920	897	920	0.93
10	11	0.0015	0.14	13.2	2.1	1	23	942	965	942	965	0.97
11	11	0.13	12	7.1	4.9	1	23	1002	1024	1002	1025	0.95

Sequence Information

Coding Sequence: ATGGATTTAAAACAAGGTTCAAGTACTGATTGGTGTCCTGACGATTTTGACCAAGATGATGATATCAATAGACCAGGCCCTTCTGGGATGAAACACAACTCAAGTCATTTTCTGattGGTGGtatgaagtttaaaaatattgacttcATTAAAGATACATTTACagatgataatattgtattaacggATACCAATGTTCGTCCATTTGATGTATTAACCAACAATGATATGCATTCCATGACAGTTCttggcAACCAAGCTACTGATTTTGGAATGACCAAACACTCACAAACTGTAATGCTACCAGAATACAACAGCATGTCAGAAGTGGGGACTATGGTATCAATGCCAGAACAGtattttcaaaatgatttatatcatattaaatcaaataatatgtcTCAAGTGTCTAATAGACATTCAGTCATAGATAATCTATCACACGACAATTCTTTAGTACAGATTgatcaattatcatttatacccaaacaaactaataattttgtaaacaatcTGGGAAGTAACCAAGATATGATTTTAGAAACTGGGAACAGCCGTTTTCTTTTTTCAGAAAATGGTGGTGGCTATATTGAAGTGACATTGAAAGaaaataatgtgttaaatagtaatgaaaatgaattttatacGGTACCACAGTCTAGATCTGTTCAAGATAATCATATTGCTCAGAAAATAGTGTCTATAGatgatttaagtttattatcatCTCCAAAATCACATCATAATGTAGAGTTATTAGTCAATCATGAAGAGTTAGTGGATGATATAGACACTTGTGATATAGCAGTTGTTGACGAATCACAAATACCACTCAATAGTAGTCAGTTAAAAGAAAGAATTGATGAAGGATCTGAAAGTGTTTCACTTGATGTTGATCATCATCAACACAGTtcagGTTTTCAAAGAATGTCAAAAGAAACAATTGAAAAGATAGCAGAAGAATTTGTTAGACAACCACAATACATTGATGAAGAAGATATAAGTATTCATTTTATCAGTAGAATTAATCCAAAACCACCAGCTCCAATAGAATATTgGTGTGAAGATTGTAATAAGCTATATCAAAATGAATCTAACTGTCCAATACATAAAGTTAATAGCATTATCGATCTAGCTGTACAAACTAGAGCTAGGGCATCATTACCTGCTACACATTTaagaattatgaaaattaaaactcaagacaatttaaataataAGTTTGGAGTATTTGCAAGGAAAACAATTCAAAAACATACCCAGTTCGGTCCATTAGAAGGTGTTAATATCAAGGATGAAGATTGTGTTGATGAGCCTATCaatgatgaatttaaatatttattggaaGTAGATAAACAGTTTAGACGAATTGATGTATCAAATGAAGATAAATCCAATTGGATGTGTTTTGTGCAACCAGCAAAAACGAAACAAGAACAGAATATGATTGTTGACCAAATCGGAgattatctttattttacaaCTACAAGAGCAATTTACCAACGAGAGGAGTTACTCGTTGGTTATAGTACATTTTATGCACACAAACGAGGCTTACCTGTATTACCTGCAGaaaacagTCAAGGCATTTCTCCTCATGTAAGAAAACCGTTTAAATCGCTGAAAATATCGCCGGCATTGTACAAGCAGTCtgataattttagaaataacatAACAAGCAAAGGAAAAATGatGAGAATATCATCAACGAATTGCAAGCATATgacaataaaaagaaaattatccaATCGATTTGGAAAAAATAATGCACAATGTAATCTTTGCACCAATGCACAgaataattctaaaaacaacaataaaatgaaattaatatcgAACAATAGTATCAAAAATATTTGGATATGTGTAGTCTGTGATTTAAAATTCTCAAAACGCGAGACAATTTTGATACATAACAAAATGCACGAAGATGAGTTTGATGTCGAACGAATAACGCTAACCGATACCAGTTGTCCTGAATGTAATTCTGAGTTTCATCTAACTGAAGAACTAATCAGACATATTTACATACACAGTTTCACGGATAATCGAATGGGCCTAGGTGGTACCATTTACAACTGTTATCAGTGCGAAAGAAGATATAGAAATGCTATTCATCTAAAGGCACATCAAGCAAAACACAAGGAAAATGATCTTAAGCCTTACAAATGTAACATGTGTGATAAGCGTTTTATGAACACTGTCGTCTTAACGTGTCACGTGCGCACTCATTTTgAGGGTGTAATTTACGACTGTCCCATGTGCCGTTTGACGTTTGTCGATTTGAAATCATTAAAGGGACACGTATATTCGCACGCGGTGAACAACATTTTCTATTGCCCGATGTGCCCACTCcaatttaatacttataaattgatCAGAAAGCACATCCGAGCTCGGCATCATGGCATTGAGTTTGGATGCGAATATTGCAATAGTTCGTTCAATAGTCGTTTCAATCTCAATTTACACATgcttagTCATTCGGACCAAAGGGATTTTTTGTGCACCATGTGTGGTAAACAGTACAAGAGGAAAGacaaactaaaaatacatatgaaCAAAGTTCATTACTCCAAGAAAAAACCATCGAAAACTcaattaaaattagaagctaGAGCAGCGAGAAAAGCACAACAAATtcaattaaaaacaacaaaaacaatgttgGAGTATGAAGGTTCGGAGTTCAGGTGTGATAAATGTTTGGTGGGTTTTAAAAGAAGAGGCGTTTATGTCAATCATTTAGTATCGAGACATCCTGAAATAAATCTTGACTCTGTACCATCACTCAATCAACCGGTGTTGCCTAAAGCCAAAATGTACATGTGTTTGTACTGTGATAAAATGTATAAAACGAATGCAAAGCGGAAATCGCACATACTTAAAAATCACCCGGATTGCGAACTTCCTGAAAAACCAACTGATAAAACGGTTACTATTGATGACAGCCCGTCCAGTCAAGTGGATTCTAGCACTGTTGCCACTGGGTCGTCCCAAGCGCACAGTTGCCAGTGGTGTTACAAACAATACGTGCTAAGAAATAAACTTTTAAGACACCAACGGGCTCATCACTATCACTTGTTGCCTCCGTCTCTACAAGAACCACAACCATCAAAAAAATTGGgacataaagttaaaaaaatggaACATCCCCCTCAAACAGTCAATATTCAGTTTACAGATACGGACGGCTTCGAATTAACGGCCACCGACATACAACTGGACAAGCCAATCGAGCCGGGCAGCATAATAGCCATCAAACGGCCCATAAAAGACAATTCCGAGTACATGTCGCAGACCATGGAAGACTTGGGTTTAAGTACAGCCGATGATAGTTTGAACGAAGAACAGTACTACCGGATATTGGACACGCAAGGCGACGTGGCTTACGCGCAGGCCATTGATCCGCCGGTCACTTTACTGACGTTTGACGGCCAGACCATTCAACAGGTGCTGTCTTCGTGCAGTACGGCTACGGTACCGACTACTGACGGCTGCGCGACAACAACATCGACCGAAGGCAGTTGCACGACGACGACTGAGGGTCTTCAGTAG
Protein Sequence: MDLKQGSSTDWCPDDFDQDDDINRPGPSGMKHNSSHFLIGGMKFKNIDFIKDTFTDDNIVLTDTNVRPFDVLTNNDMHSMTVLGNQATDFGMTKHSQTVMLPEYNSMSEVGTMVSMPEQYFQNDLYHIKSNNMSQVSNRHSVIDNLSHDNSLVQIDQLSFIPKQTNNFVNNLGSNQDMILETGNSRFLFSENGGGYIEVTLKENNVLNSNENEFYTVPQSRSVQDNHIAQKIVSIDDLSLLSSPKSHHNVELLVNHEELVDDIDTCDIAVVDESQIPLNSSQLKERIDEGSESVSLDVDHHQHSSGFQRMSKETIEKIAEEFVRQPQYIDEEDISIHFISRINPKPPAPIEYWCEDCNKLYQNESNCPIHKVNSIIDLAVQTRARASLPATHLRIMKIKTQDNLNNKFGVFARKTIQKHTQFGPLEGVNIKDEDCVDEPINDEFKYLLEVDKQFRRIDVSNEDKSNWMCFVQPAKTKQEQNMIVDQIGDYLYFTTTRAIYQREELLVGYSTFYAHKRGLPVLPAENSQGISPHVRKPFKSLKISPALYKQSDNFRNNITSKGKMMRISSTNCKHMTIKRKLSNRFGKNNAQCNLCTNAQNNSKNNNKMKLISNNSIKNIWICVVCDLKFSKRETILIHNKMHEDEFDVERITLTDTSCPECNSEFHLTEELIRHIYIHSFTDNRMGLGGTIYNCYQCERRYRNAIHLKAHQAKHKENDLKPYKCNMCDKRFMNTVVLTCHVRTHFEGVIYDCPMCRLTFVDLKSLKGHVYSHAVNNIFYCPMCPLQFNTYKLIRKHIRARHHGIEFGCEYCNSSFNSRFNLNLHMLSHSDQRDFLCTMCGKQYKRKDKLKIHMNKVHYSKKKPSKTQLKLEARAARKAQQIQLKTTKTMLEYEGSEFRCDKCLVGFKRRGVYVNHLVSRHPEINLDSVPSLNQPVLPKAKMYMCLYCDKMYKTNAKRKSHILKNHPDCELPEKPTDKTVTIDDSPSSQVDSSTVATGSSQAHSCQWCYKQYVLRNKLLRHQRAHHYHLLPPSLQEPQPSKKLGHKVKKMEHPPQTVNIQFTDTDGFELTATDIQLDKPIEPGSIIAIKRPIKDNSEYMSQTMEDLGLSTADDSLNEEQYYRILDTQGDVAYAQAIDPPVTLLTFDGQTIQQVLSSCSTATVPTTDGCATTTSTEGSCTTTTEGLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01033284;
90% Identity: iTF_00973283; iTF_01305932; iTF_01304429; iTF_00136373; iTF_00135667;
80% Identity: -