Basic Information

Insect: Melanaphis sacchari
Gene Symbol: prdm10
Assembly: GCA_002803265.2
Location: NW:1991220-2047776[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.68 49 4.1 0.2 3 23 621 641 619 641 0.93

2 11 0.047 3.4 7.7 0.1 2 23 656 677 655 677 0.95

3 11 0.00043 0.031 14.1 3.2 1 23 691 713 691 713 0.97

4 11 0.0095 0.69 9.9 3.4 1 23 721 743 721 743 0.97

5 11 0.0018 0.13 12.2 0.3 1 23 749 771 749 771 0.96

6 11 0.0013 0.093 12.7 2.0 1 23 777 800 777 801 0.96

7 11 3.6e-05 0.0026 17.5 1.2 3 23 807 827 805 827 0.98

8 11 3.9e-06 0.00028 20.6 1.8 1 23 833 856 833 856 0.95

9 11 0.19 14 5.8 0.4 1 23 896 919 896 919 0.90

10 11 0.0009 0.065 13.1 2.1 1 23 941 964 941 964 0.97

11 11 0.051 3.7 7.6 5.0 1 23 1001 1023 1001 1024 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.68	49	4.1	0.2	3	23	621	641	619	641	0.93
2	11	0.047	3.4	7.7	0.1	2	23	656	677	655	677	0.95
3	11	0.00043	0.031	14.1	3.2	1	23	691	713	691	713	0.97
4	11	0.0095	0.69	9.9	3.4	1	23	721	743	721	743	0.97
5	11	0.0018	0.13	12.2	0.3	1	23	749	771	749	771	0.96
6	11	0.0013	0.093	12.7	2.0	1	23	777	800	777	801	0.96
7	11	3.6e-05	0.0026	17.5	1.2	3	23	807	827	805	827	0.98
8	11	3.9e-06	0.00028	20.6	1.8	1	23	833	856	833	856	0.95
9	11	0.19	14	5.8	0.4	1	23	896	919	896	919	0.90
10	11	0.0009	0.065	13.1	2.1	1	23	941	964	941	964	0.97
11	11	0.051	3.7	7.6	5.0	1	23	1001	1023	1001	1024	0.95

Sequence Information

Coding Sequence: ATGGATTTAAAACAAGGTTCAAGTACCGATTGGTGTCCTGATGATTTTGATCAAGATGATGATATCAATAGACCGGGCCCTTCTGGGATGAAACATAACACTGGTCATTTTCTgatTGGTGGtatgaagtttaaaaatattgactttaCTAAAGATACCTTTAcagatgataatattgtactaacAGATACCAACGGCCGTCCATTTGATGTATTAACCAACAATGATATGCATTCAATGACAGTTCTTGgTAATCAAGCTACAGATTTTGCAATGACCAAACACTCACAAACTGTAATGTTACCAGAATATAACAGTATGTCAGAAGTGGAGACTATGGTATCAATACCTGAacactattttcaaaatgatttatatcatattaaatcaaataatatgtctCAAGTATCTAATAGACATTCAGTCATGGATAATCTATCACACGATAATTCTTTAGTACAAATTGATCAGTTATCATATATTCCTaaacaaactaataattttgtcaataatttgGGAAGTAATCAAGATATGATTTTAGAGACTGGGAAcaatcattttcttttttcagaAAATGGTGGTAGCTATATTGAAGTGACATTGAAAGAAAATGATGTgttaaataatgatgaaaatgaattttatgcGGTACCCCAGTCTAGATCTGTTCAAGATAATCATATTGCTCAGAAAATAGTATCTATAGacgatttaagtttattatcgtCTCCAAAATCACATCATAATGtagaattattagttaatcacGAAGAGTTAGTAGATGATATAGACACTTGTGATATAGCAGTTGTTGATGAATCACAAATTCCACTCAATAGTAGTCAGTTAAAAGATAGAATCGATGAAGGATCTGAAAGTGTTTCACTTGATGTTGATCATCATCAACATAGTtcagGTTTTCAAAGAATGTCAAAAGAAACAATTGAAAAGATAGCAGAAGAATTTGTTAGACAACCACAATGTATTGATGaagatataagtattaattttatcagtaaAATTAATCCAAAACCATCAGCTCTAATAGAATATTgGTGTGAAGATTGTAATAAGCTTtatcaaaatgaattaaacTGTCCAATACATAAAGTTAATAGTATTATCGATCTAGCTGTACAAACTAGAGCTAGGGCATCATTGCCTGCTACACATTTaagaattatgaaaattaaaactcaaaataatttaaataataAGTTTGGAGTATTTGCAAggaaaacaattcaaaaacGTACCCAGTTTGGTCCATTAGAAGGTGTTCATATCAAGGATGAAGATTATGTTGAAGAGACTATCaatgatgaatttaaatatttattggaagTAGATAAACAGTTTAGGCGAATCGATGTTTCAAATGAAGATAAATCCAATTGGATGTGTTTTGTGCGACCAGCAAAAACGAAACAAGaacaaaatatgattgttGATCAAATCGGagattatctttattttacaactaCTAGAGCAATTTACCAACGAGAAGAGTTACTCGTTGGCTACAGTACATTTTATGCACACAAACGAGGCCTACATGTATTGCCTGCAGaaaACAATCATGGCATTTCTCTTCATGTACGAAAACCGTTTAAATCGATGAAAGTATCTCAAGAGTTATACAAACAGTCTGACCATTTTAGAAATAACTTAACAAGTAAAGGAAAAATGATGAGAACATCATCAACGATTTGCAAGCATATgacaataaaaagaaaaatatccaatcgatttggtaaaaataatgtacagtgTAATCTTTGCGTCAATGCACAGAatagttctaaaaataactataaaataaaattaagatcgAACAATAGCATCAGAAATATTTGGATGTGTGTAGCCTGTGATTTGAAGTTCTCAAAACGTGagacaattttaatacacagCAAAATGCACGAAGATGAGTTTGATGTCGATCGAGTTACGTTAACCGATACTAGCTGTCCAGAATGTAATTCTGAGTTTTATTTAACTGAAGAACTTATTAAACACGTTTACGTGCACAGTTTCACGGATAACCGAATGGGCCCAGGTGGTACCATTTATAACTGTTATCAGTGCGAAAGGAGATATAGGAATTCTATTCATCTAAAGgCACATCAAGCAAAACACAAAGAAAATGATCTCAAACCTTATAAATGTAACATGTGTGACAAGCGTTTTATGAACACTGTCGTCTTAACGTGTCACGTGCGCACTCATTTTGagGGTGTAATTTATGACTGTCCCATGTGCCGTTTAACGTTTGTTGATTTGAAATCATTAAGGGGACACGTATATTCGCATGCGGTGAACAACATCTTCTATTGCCCGATGTGCCCACTCcaatttaatacttataaattgatCAGAAAGCACATCCGAGCTCGTCATCATGGTACTGAGTTTGGATGCGAATACTGCAATAATTCGTTCACCAGTCGTTTTAATCTCAATTTACACATgcttagTCATTCGGACCAAAGGGATTTTTTGTGTACCATGTGTGGTAAACAGTACAAGAGGAAAGACAAACTGAAAATACACATGAATAAAGTTCATTATGCCAAGAAAAAGCCGTCGAaaactcaattaaaaatagaagcaAGAGAAACGAGAAGAGCACAACAAAttcaattaAGAACAGCAAAAACAATGTTGGAGTATGAAAGTTCAGAGTTCAGATGTGACAAATGTTTGGTGGGTTTTAAAAGAAGAGGCGTTTACGTCAATCATTTGGTGTTGAGACATCCTGAAATAAATCTTGACTCTGTTCCGTCACTTAACCAACCAGTCTTGTCTAAAGCCAAAATGTACATGTGTCTGTACTGtgataaaATGTACAAAACGAATGCTAAGCGGAAATCTCACATACTTAAAAATCACCCGGATTGTGAACTCCCCGAAAAACCAACTGATAAAACAGTTACTATTGATGATAGTTCGTCCAGTCAAGTGAATACTAGCACTGTTGCCACTGGGTCGTCCCAGGCGCACAGTTGCCAGTGGTGTTACAAACAATACgtgctaaaaaataaacttttaagacACCAACGGGCTCATCACTATCACTTGTTGCCTCCATCTCTACAAGAGCCACAACCATCAAAAAAGTTGGggcataaagtaaaaaaaatagaacatcCTTCTCAAACGGTCAATATTCAGTTTACCGATACGGACGGTTTCGAATTAACGGCCACCGACATACAGCTGGACAATCCAATTGAACCGGGCAGCATAATAGCCATCAAACGGCCCATAAAAGACAATTCCGAGTACATGTCGCAGGCTATGCAAGAATTGGGCTTGAGCACGGCCGACAACAGTTTGAACGAAGAGCAGTACTACCGGATATTGGACACGCAAGGCGATGTGGCTTACGCGCAGGCCATTGATCCGCCGGTCACTTTATTGACGTTCGATGGCCAGACCATTCAACAGGTGTTGTCTTCGTGCAGCACGGCTACGGTACCGACTACTGACGAGTGCGCGGCAACGACATCGACCGGAGTCGTCAATTGTGCGATGTCGACTGAGGGTCTTCAGTATAGCAACACCCCCTCGGCCTCCGCGGCGCTATCTCGACCGTCTTAA
Protein Sequence: MDLKQGSSTDWCPDDFDQDDDINRPGPSGMKHNTGHFLIGGMKFKNIDFTKDTFTDDNIVLTDTNGRPFDVLTNNDMHSMTVLGNQATDFAMTKHSQTVMLPEYNSMSEVETMVSIPEHYFQNDLYHIKSNNMSQVSNRHSVMDNLSHDNSLVQIDQLSYIPKQTNNFVNNLGSNQDMILETGNNHFLFSENGGSYIEVTLKENDVLNNDENEFYAVPQSRSVQDNHIAQKIVSIDDLSLLSSPKSHHNVELLVNHEELVDDIDTCDIAVVDESQIPLNSSQLKDRIDEGSESVSLDVDHHQHSSGFQRMSKETIEKIAEEFVRQPQCIDEDISINFISKINPKPSALIEYWCEDCNKLYQNELNCPIHKVNSIIDLAVQTRARASLPATHLRIMKIKTQNNLNNKFGVFARKTIQKRTQFGPLEGVHIKDEDYVEETINDEFKYLLEVDKQFRRIDVSNEDKSNWMCFVRPAKTKQEQNMIVDQIGDYLYFTTTRAIYQREELLVGYSTFYAHKRGLHVLPAENNHGISLHVRKPFKSMKVSQELYKQSDHFRNNLTSKGKMMRTSSTICKHMTIKRKISNRFGKNNVQCNLCVNAQNSSKNNYKIKLRSNNSIRNIWMCVACDLKFSKRETILIHSKMHEDEFDVDRVTLTDTSCPECNSEFYLTEELIKHVYVHSFTDNRMGPGGTIYNCYQCERRYRNSIHLKAHQAKHKENDLKPYKCNMCDKRFMNTVVLTCHVRTHFEGVIYDCPMCRLTFVDLKSLRGHVYSHAVNNIFYCPMCPLQFNTYKLIRKHIRARHHGTEFGCEYCNNSFTSRFNLNLHMLSHSDQRDFLCTMCGKQYKRKDKLKIHMNKVHYAKKKPSKTQLKIEARETRRAQQIQLRTAKTMLEYESSEFRCDKCLVGFKRRGVYVNHLVLRHPEINLDSVPSLNQPVLSKAKMYMCLYCDKMYKTNAKRKSHILKNHPDCELPEKPTDKTVTIDDSSSSQVNTSTVATGSSQAHSCQWCYKQYVLKNKLLRHQRAHHYHLLPPSLQEPQPSKKLGHKVKKIEHPSQTVNIQFTDTDGFELTATDIQLDNPIEPGSIIAIKRPIKDNSEYMSQAMQELGLSTADNSLNEEQYYRILDTQGDVAYAQAIDPPVTLLTFDGQTIQQVLSSCSTATVPTTDECAATTSTGVVNCAMSTEGLQYSNTPSASAALSRPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01033284;
90% Identity: iTF_01329279;
80% Identity: -