Basic Information

Insect: Aphis gossypii
Gene Symbol: prdm10
Assembly: GCA_004010815.1
Location: NW:155600-207541[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.035 2.6 8.2 0.5 1 23 622 644 622 644 0.97

2 11 0.03 2.3 8.4 0.4 2 23 659 680 658 680 0.95

3 11 0.00019 0.015 15.3 4.1 1 23 694 716 694 716 0.98

4 11 0.0096 0.73 9.9 3.4 1 23 724 746 724 746 0.97

5 11 0.0017 0.13 12.3 0.3 1 23 752 774 752 774 0.96

6 11 0.0009 0.068 13.2 2.3 1 23 780 803 780 804 0.96

7 11 0.00011 0.0086 16.0 1.2 3 23 810 830 808 830 0.98

8 11 3.9e-06 0.0003 20.6 1.8 1 23 836 859 836 859 0.95

9 11 0.19 15 5.8 0.4 1 23 899 922 899 922 0.90

10 11 0.00092 0.069 13.1 2.1 1 23 944 967 944 967 0.97

11 11 0.03 2.3 8.4 2.9 1 23 1004 1027 1004 1027 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.035	2.6	8.2	0.5	1	23	622	644	622	644	0.97
2	11	0.03	2.3	8.4	0.4	2	23	659	680	658	680	0.95
3	11	0.00019	0.015	15.3	4.1	1	23	694	716	694	716	0.98
4	11	0.0096	0.73	9.9	3.4	1	23	724	746	724	746	0.97
5	11	0.0017	0.13	12.3	0.3	1	23	752	774	752	774	0.96
6	11	0.0009	0.068	13.2	2.3	1	23	780	803	780	804	0.96
7	11	0.00011	0.0086	16.0	1.2	3	23	810	830	808	830	0.98
8	11	3.9e-06	0.0003	20.6	1.8	1	23	836	859	836	859	0.95
9	11	0.19	15	5.8	0.4	1	23	899	922	899	922	0.90
10	11	0.00092	0.069	13.1	2.1	1	23	944	967	944	967	0.97
11	11	0.03	2.3	8.4	2.9	1	23	1004	1027	1004	1027	0.95

Sequence Information

Coding Sequence: ATGGATTTAAAACAAGGTTCAAGTACTGATTGGTGTCCTGATGATTTTGATCAAGATGATGATATTAATAGACCAGGCCCTTCTGGAATGAAACACAACACTGGTCATTTTCTGATTGGTGGtatgaagtttaaaaatattgacttcATTAAAGATACCTTTAcagatgataatattgtattaacagATACTAATGGTCGTCCATTTGATGTATTAACCAATAATGATATGGATTCCATGACAGTTCTTGatgatCAAGCTACAGATTTCGGAATGACCAAACACTCACAAACTGTAATGTTACCAGAATACAACAGCATGTCAGAAGTGGAGACTATGGTATCAATGCCAGAACAGTATTTTCAAAACGATCTATATcacattaaatcaaataatatgtctCAAGTGTCTAATAGACATTCAGTAATGGATAATCTATCACACGATAATTCTTTAGTACAAATCGATCAGTTATCATTTATTCCCaaacaaactaataattttgtcaataatcTGGGAAGTAATCAAGATATGATTTTAGAGACTGGCAACAATCGTTTTCTTTTTTCAGAAAATGGTGGTAGTTATATTGAAGTAACATTGAAAGAAAATGATGTTTTAAATAGTgatgaaaatgaattttatacagTACCTCAGTCTAGATCTGTTCAAGATAATCATATTGCCCAGAAAATAGTGTCTATTGatgatttaagtttattatcatCTCCAAAATCACATCATAATGTAGAGTTATTAGTCAATCATGAAGAGTTAGTGGACGATATAGACACTTGTGATATAGCAGTTGTTGATGAATCACAAATTCCTCTCAATAGTAATCAGTTAAAAGATAGAATCGAAGAAGGGTCTGAAAGTGTTTCACTTGATGTTGATCATCATCAACATAGTtcaggttTTCAAAGAATGTCAAAAGAAACAATTGAAAAGATAGCAGAAGAATTTGTTAGACAACCACAACGTATTGATGaagatataagtattaattttatcagtaGAATTAATCCAAAACCACCATCTCTAATAGAATATTggTGTGAAGATTGTAATAAGCTATATCAAAATGAATCAAATTGTCCAATTCATCGAGTTAATAGTATCATTGATCTAGCTGTACAAACTAGAGCTAGGGCATCATTACCTGCTACACATTTaagaattatgaaaattaaaactcaagaaaatttaaataataagtttGGAGTATTTGCAAggaaaacaattcaaaaacataCCCAGTTTGGCCCATTAGAGGGTGTTAATATCAAGGATGAAGATTGTGTTGAAGAGCCTATCaatgatgaatttaaatatttattggaaGTAGATAAACAGTTTAGACGAATTGATGTATCAAATGAAGataaatctaATTGGATGTGTTTTGTGCAACCAGCAAAAACGAAACAAGAACAGAACATGATTGTTGATCAAATTGGagattatctttattttacaacTACTAGAGCAATTTACCAACGAGAAGAGTTACGCGTTGGCTATAGTACATTTTATGCACACAAACGAGGGCTGCAAGTATTGCCTGCAGCTGCAGaaaataatcaTGGCATTTCCTCTCTTCAAGTACGAAAACCGtttaaatcattgaaaatatcGCAGGAATTGTGCAAACAGTCTGATCATTTAAGAAATAACTTACCTAGCAAAGGaaaaatgatgagAACATCGTCAACCCCTTGcaaaaatatgacaataaaaagaaaattgtccAATcgatttggtaaaaataattcgcAGTGTAATCTTTATGTCAATGCACAGAGTAattctaaaaacaattatagaaTGAAATTAAGATCGAACTATAGCATTTTaaatatttttatgtgtgtatCTTGCGAATTGAAATTCTCAAAACGTGagacaattttaatacatattaaaatgcatGACGATGAGTTTGATGGTGAACGAGTGACGTTAACCGATACCAGTTGTCCGGAATGTAATTCTGAGTTTCATCTAAACGAAGAACTAATTAAACACGTTTACGTGCACAGTTTTACGGATAATCGAATGGGCCTAGGTGGTACCATTTACAACTGTCATCAGTGCGAAAGGAGATATAGAAATGCTATTCATCTAAAGGCACATCAAGCAAAACACAAGGAAAATGATCTCAAGCCTTACAAATGTAACATGTGTGACAAGCGTTTTATGAACACTGTCGTCTTAACGTGTCACGTGCGCACTCATTTTGAGGGTGTAATTTACGACTGTCCCATGTGCCGTTTGACGTTTGTCGATTTGAAATCATTAAAGGGACACGTTTATTCGCACGCGGTGAACAACATCTTCTATTGCCCGATGTGTCCACTTCAATTTAACACTTATAAATCGATCAGAAAGCACATCCGAGCTCGGCATCACGGTATTGAGTTTGGATGcgaatattgtaatagttCGTTCAACAGCCGTTTCAATCTTAATTTACACATGCTTAGCCATTCAGATCAAAGAGATTTTTTGTGCACTATGTGTGGTAAACAGTACAAGAGGAAAGACAAACTGAAAATACATATGAATAAAGTTCATTATTCCAAGAAAAAACCATCGAAAActctattaaaattagaagCTAAAGCAGAGAAAAGAGCACAACAAATtcaattaaaaacagCAAAAACAATGTTGGAGTATGAAAGTTCAGAGTTCAGGTGTGATAAATGTTTGGTGGGTTTTAAAAGAAGAGGCGTTTACGTTAATCATTTGGTATTGAGACACCCTGAAATAAATCTTAACTCGGTACCGTCACTCAACCAACCGGTCTTGCCTAAAGCCAAAATGTACATGTGTTTGTACTGtgataaaATGTACAAAACGAATGCCAAACGGAAATCGCACATACTAAAAAATCACCCGGATTGCGAACTCCCCGAAAAACCAACCGATAAAACGATTACTATTGATGACAGTCCGTCCAGTCTAGTGACTACCAGCACTGCTGCCACTGGGTCGTCACAGGCGCATAGCTGCCAGTGGTGTTACAAACAATACgtgctaaaaaataaacttctaAGACATCAACGGGCACAACACTACCATTTGTTGCCTCCGTCTCTACAAGAACCTCAACCATCGAAAAAGTTGgggtataaagtaaaaaagacTAATCATCCCCCTCAAACGGTCAATATTCAGTTTACTGATACAGACGGTTTTGAATTAACGGCCACCGACATACAGCTGGACAATCCAATCGAACCGGGCAGCATAATAGCCATCAAACGGCCCATAAAAGGAAATTCACAATACATGTCACAGACCATGCAAAACTTGGGCCTGAGCACGGCCAACGGCGGTTTGAACGAAGAGCAGTACTATCGGATATTGGACACGCAAGGCGATGTGGCTTACGCTCAGGTCATCGATTCGCCCGTCACTTTACTGACTTTTGCCGGCCAGACCATTCAACAGGTGCTGTCTTCGTGCAGCGCGGCTACGGTATTGACAACTGACTGCTGCACGTCAACGACATCGACCGGAGGCAGTTGCACGACGTCAACCGAGGGTCTTCAGTAA
Protein Sequence: MDLKQGSSTDWCPDDFDQDDDINRPGPSGMKHNTGHFLIGGMKFKNIDFIKDTFTDDNIVLTDTNGRPFDVLTNNDMDSMTVLDDQATDFGMTKHSQTVMLPEYNSMSEVETMVSMPEQYFQNDLYHIKSNNMSQVSNRHSVMDNLSHDNSLVQIDQLSFIPKQTNNFVNNLGSNQDMILETGNNRFLFSENGGSYIEVTLKENDVLNSDENEFYTVPQSRSVQDNHIAQKIVSIDDLSLLSSPKSHHNVELLVNHEELVDDIDTCDIAVVDESQIPLNSNQLKDRIEEGSESVSLDVDHHQHSSGFQRMSKETIEKIAEEFVRQPQRIDEDISINFISRINPKPPSLIEYWCEDCNKLYQNESNCPIHRVNSIIDLAVQTRARASLPATHLRIMKIKTQENLNNKFGVFARKTIQKHTQFGPLEGVNIKDEDCVEEPINDEFKYLLEVDKQFRRIDVSNEDKSNWMCFVQPAKTKQEQNMIVDQIGDYLYFTTTRAIYQREELRVGYSTFYAHKRGLQVLPAAAENNHGISSLQVRKPFKSLKISQELCKQSDHLRNNLPSKGKMMRTSSTPCKNMTIKRKLSNRFGKNNSQCNLYVNAQSNSKNNYRMKLRSNYSILNIFMCVSCELKFSKRETILIHIKMHDDEFDGERVTLTDTSCPECNSEFHLNEELIKHVYVHSFTDNRMGLGGTIYNCHQCERRYRNAIHLKAHQAKHKENDLKPYKCNMCDKRFMNTVVLTCHVRTHFEGVIYDCPMCRLTFVDLKSLKGHVYSHAVNNIFYCPMCPLQFNTYKSIRKHIRARHHGIEFGCEYCNSSFNSRFNLNLHMLSHSDQRDFLCTMCGKQYKRKDKLKIHMNKVHYSKKKPSKTLLKLEAKAEKRAQQIQLKTAKTMLEYESSEFRCDKCLVGFKRRGVYVNHLVLRHPEINLNSVPSLNQPVLPKAKMYMCLYCDKMYKTNAKRKSHILKNHPDCELPEKPTDKTITIDDSPSSLVTTSTAATGSSQAHSCQWCYKQYVLKNKLLRHQRAQHYHLLPPSLQEPQPSKKLGYKVKKTNHPPQTVNIQFTDTDGFELTATDIQLDNPIEPGSIIAIKRPIKGNSQYMSQTMQNLGLSTANGGLNEEQYYRILDTQGDVAYAQVIDSPVTLLTFAGQTIQQVLSSCSAATVLTTDCCTSTTSTGGSCTTSTEGLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01033284;
90% Identity: iTF_01329279;
80% Identity: -