Sgrm000380.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizaphis graminum
Gene Symbol
-
Assembly
GCA_003264975.1
Location
QEWZ01003491.1:1-4089[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00076 0.073 14.1 4.5 1 23 251 273 251 273 0.97
2 11 2.1e-05 0.002 19.0 2.5 1 23 279 301 279 301 0.98
3 11 0.00019 0.018 16.0 0.5 1 23 307 330 307 330 0.97
4 11 0.047 4.5 8.4 3.4 1 21 336 356 336 358 0.95
5 11 0.00012 0.011 16.6 1.9 1 23 364 386 364 386 0.99
6 11 0.00016 0.016 16.2 1.4 1 23 392 414 392 414 0.98
7 11 0.00058 0.056 14.4 3.0 1 23 421 444 421 444 0.97
8 11 0.085 8.2 7.6 2.4 2 23 451 472 450 472 0.93
9 11 0.00018 0.017 16.1 0.8 1 23 478 500 478 500 0.99
10 11 0.0003 0.029 15.3 7.4 1 23 506 529 506 529 0.95
11 11 1.9e-06 0.00019 22.2 5.0 1 23 543 565 543 565 0.98

Sequence Information

Coding Sequence
atgtttggtTATAGGCATTTAATTAACAAGACTTCAACCATGTCTGAAAACGAAGGAACAACtattgtatTAGAAGGTGGATCATCTGCAAATACTATGACTATTGATGCGGCTCACATAAAGTTGGAGGCTTCAACCTCTGGCACTGAAAATATAActgatatacaaaattatttggattcatttaataaagaaattgaAGGAAATGAAGTAACACAAGTACAAACtgatGGGGATTCAGTAGAAcatgcatattttattgatcaaaatgtccaatattattatcaaacaacTACAGGAGATGGCCAGATGGTTATGGTTGgaggactTTCAGAACAAGATGCACAAATGATGGCTGagacaaatgaaaataatatggataatgTCACTCAAATTGTTCTGCCTAATGtacaagataaaattaaaaaagatatccctcaaaTTGTTGCTTTAGCAGATGGTAGTGGGTATCAAACAGTAACTCTAGTTCAAGCTGATGCTGAAGCTAACAATTATGTACTTTATGTAGTCAaacaaaatgacaaaaatgatgAAACTCCAAATGTTATGGAGATGTCACAAGAAGAACATGATCCAGATGATCCTGATGTTAGTaatgtatatgattttaatgatGCAGAAGATCCAACAATAccaaaaaaacaagaaatagaAgacTCAGGTGAAGAAGAtgacaaatctaaaatagttaaattagtACCTAAAAAGTCACAAACAGTAACTCAAGCACATATGTGTAATTATTGCAATTACACTACTGGAAaaagGTATTTATTGTCTCGTCATATGAAGTCTCATTCTAAAGAACGTCCACATAAATGTACTGTTTGTGAACGTGGTTTCAAAACTCTAACTTCTTTGCAAAATCATGTGAATACTCATACTGGAACAAAACCATATCAATGTCGAAGTTGTCCAAGTGCTTTTACTACATCAGgagAACTTGTTAGACATGTTCGGTATAAACATACTCATGAAAAACCAcataaatgtacaatatgtgATTATGCTAGTGTAGAACTTAGCAAAATGAGAAATCATATGAGATGTCACACTGGTGAAAGACCATACcaatgtccACATTGTACTTATGCAAGTCcagatacatttaaattaaagcGCCATTTGCGTATACACACTGGTGAGAAGCCATATGAATGTGATATCTGCTTTTCTAGGTTTACCCAATCCAACAGTTTAAAAACACACAGATTAATCCATagtgGTGAAAAGCCTGTATTTAAGTGTGACCATTGTCCTGCTACTTGTGGGCGTAAAACTGATTTACGTATACATGTACAAAAGCTTCATACTTCTGATAAACCTATTAAGTGCAAACGATGTGGTGATGCATTTCCTGATCGTTACCAGTACAAGGTTCACTGTAAATCGCACGAAGgggaaaaatgttataaatgtgAACTGTGTCCCTATGCTTCCATGTCTCAGCGTCATCTTGAAACTCATATGTTAATACATACAGATGAAAAACCATTCCATTGTAAACAATGTGATCagtcATTCagacaaaaacaattattgcgCCGCCATCATAATTTGTATCATAATCCAGCATATATACCACCTCCACCACATGCCAAAACTCATCAGTGTAATACATGTCAACGATCATTTAGACATAAAGGAAATTTATTAAGACATATGGAAGTTCATATGCAAGAATCAACTGGAAATGATCGAAATACAGCAATAAAACAAAGATTagaggtattattatttaaatttattattaaactttttatttaa
Protein Sequence
MFGYRHLINKTSTMSENEGTTIVLEGGSSANTMTIDAAHIKLEASTSGTENITDIQNYLDSFNKEIEGNEVTQVQTDGDSVEHAYFIDQNVQYYYQTTTGDGQMVMVGGLSEQDAQMMAETNENNMDNVTQIVLPNVQDKIKKDIPQIVALADGSGYQTVTLVQADAEANNYVLYVVKQNDKNDETPNVMEMSQEEHDPDDPDVSNVYDFNDAEDPTIPKKQEIEDSGEEDDKSKIVKLVPKKSQTVTQAHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHVNTHTGTKPYQCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFSRFTQSNSLKTHRLIHSGEKPVFKCDHCPATCGRKTDLRIHVQKLHTSDKPIKCKRCGDAFPDRYQYKVHCKSHEGEKCYKCELCPYASMSQRHLETHMLIHTDEKPFHCKQCDQSFRQKQLLRRHHNLYHNPAYIPPPPHAKTHQCNTCQRSFRHKGNLLRHMEVHMQESTGNDRNTAIKQRLEVLLFKFIIKLFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00184818;
90% Identity
iTF_01330797; iTF_01346640; iTF_01170093; iTF_01347471; iTF_01329240;
80% Identity
-