Basic Information

Insect: Sipha maydis
Gene Symbol: -
Assembly: GCA_034509805.1
Location: JASXSY010000025.1:143464-154147[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00082 0.15 13.7 4.5 1 23 294 316 294 316 0.97

2 11 2.2e-05 0.0041 18.7 2.5 1 23 322 344 322 344 0.98

3 11 0.00021 0.038 15.6 0.5 1 23 350 373 350 373 0.97

4 11 0.051 9.4 8.1 3.4 1 21 379 399 379 401 0.95

5 11 0.00013 0.024 16.3 1.9 1 23 407 429 407 429 0.99

6 11 0.00017 0.032 15.8 1.4 1 23 435 457 435 457 0.98

7 11 0.00092 0.17 13.6 2.8 1 23 464 487 464 487 0.97

8 11 0.0024 0.45 12.2 2.3 2 23 494 515 493 515 0.93

9 11 0.00019 0.036 15.7 0.8 1 23 521 543 521 543 0.99

10 11 0.00033 0.062 15.0 7.0 1 23 549 572 549 572 0.95

11 11 2.1e-06 0.00039 21.9 5.0 1 23 586 608 586 608 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00082	0.15	13.7	4.5	1	23	294	316	294	316	0.97
2	11	2.2e-05	0.0041	18.7	2.5	1	23	322	344	322	344	0.98
3	11	0.00021	0.038	15.6	0.5	1	23	350	373	350	373	0.97
4	11	0.051	9.4	8.1	3.4	1	21	379	399	379	401	0.95
5	11	0.00013	0.024	16.3	1.9	1	23	407	429	407	429	0.99
6	11	0.00017	0.032	15.8	1.4	1	23	435	457	435	457	0.98
7	11	0.00092	0.17	13.6	2.8	1	23	464	487	464	487	0.97
8	11	0.0024	0.45	12.2	2.3	2	23	494	515	493	515	0.93
9	11	0.00019	0.036	15.7	0.8	1	23	521	543	521	543	0.99
10	11	0.00033	0.062	15.0	7.0	1	23	549	572	549	572	0.95
11	11	2.1e-06	0.00039	21.9	5.0	1	23	586	608	586	608	0.98

Sequence Information

Coding Sequence: ATGATAATATCAGTGAACAACGTCGCTTCAAACGAACTCGGGAGAAATACGGAGACGAAGACGACGacgccgccaccaccgccgaAACGTATACGTAATCCGCAGCCGATCGACAAGACACGCATGACCGCCGCGAACATAACgtatttGATTGACGATAAACCAACAATGTCTGAAAATGATGCATTACCTGAAGGAACAACTATAGtattagatAGTGGATCATCTGAAAATACAATGACTATTGATGGAATTAAATTGGAGCCGTCTACCTCAGGAACTGAAAATATTACTGATATACAAAATTACTTGGACTCATTTAATAAAGAGATTGAGGGTAATGAAGTGACACAAGTGACTACTGatggTGATTCTGTAGAGcatacatatttcattgatcAAAATGTccagtattattatcaaacaacCACAGGAGATGGTCAAATGGTTATGGTTGGAggACTTTCTGAACATGATGCACAAATAATGGCtgatacaaatgaaaataatatagataatgttACCCAAATTGTACTTCCTGGTCaacaagataaaattaaaaaggaaataccacaaattgtgGCTTTGGCAGATGGTACTGTTACTCTTGTTCAAACTGAAACTGAACCAAACAATTATGTACTTTATGTTGTCAAACaaccaaatgaaaaaaatgaagaaacttCTAATATCAGCATGGAGATTTCTCAAGATGATCCTGATCCAGATGATCCAGATGTTAGCAATGTATACGATTTCAATGATGGTGAAGATCCAACTAATTCCAAAAAATTAGATGTTGTTGAATCTGGTGAAGAGGAtgacaaatcaaaaatatctaaattaacaCCCAAAAAGTCACAAACTGTGACTCAAGCTCATAtgtgtaattattgtaattatacaactggaaaaagatatctGCTTTCTCGTCATATGAAATCGCATTCCAAAGAACGTCCACATAAGTGTACTGTATGTGAACGTGGTTTTAAAACTCTTACTTCATTGCAAAATCATGTCAACACCCATACTGGAACAAAACCATATCAATGTCGGAGTTGTCCTAGTGCTTTCACAACATCAGGAGAACTTGTCAGACATGTTCGATATAAGCACACTCATGAAAAACcacataaatgtacaatatgcGATTATGCTAGTGTAGAACTTAGTAAAATGAGAAATCATATGAGATGTCACACTGGTGAACGACCATatcaatgTCCACATTGTACATATGCAAGTCcagatacatttaaattaaaacgtcATCTACGTATACACACTGGTGAAAAACCTTATGAATGTGACATTTGTTTTTCTAGATTTACGCAGTCTAATAGTCTAAAAACACATAGATTAATACATAGtgGAGAAAAGCCAGTGTTTAAATGTGAACATTGTCCAGCCACTTGTGGTCGAAGAACTGACTTACGTATACATGTTCAAAAGCTTCATACCTCAGATAAACCCATTAAGTGCAAACGATGTGGTGAAGCTTTTCCTGATCGTTACCAATAtaagGTACATTGCAAATCACATGAAggagaaaaatgttataaatgtgaGTTGTGTCCTTATGCTTCCATGTCTCAACGCCATCTTGAAACTCATATGCTAATTCACACTGATGAAAAACCATTCCATTGCAAGCTTTGTGATCagtctttCAGGCAAAAACAATTACTACGTCGacatcataatttatatcataatccAGCATATATACCACCCCTACCACATGAGAAACCACATCAGTGTAATACTTGTCAACGATCATTTAGACATAAAGGAAATTTATTGAGACATATGGAAGTTCATATGCAAGAATCAACTGGGAATGATCGAAATATAGCAATTAAACAAAGATTagaaTATACAGATTCAGCCAATGAAGATGAATCTGAAGAGGATACAAGTATTCCAACGAGGGAAACTGGAGTTGTAGCAGTAGAAGGTGATGATGGGCATCAATATGTTGTGCTTGAAGTGATTCAACTAGATGGTCAAGAACAGGTGGATAATTATTCTTCTACTAATGTATCAATACAGCAAGTTGACCAATCTTcttcTCCAAGTCAAAAAGatctaacaattttaaaaactgcgTCATTATCAGATGTGAAAGAAGAATGTGGTGATGGTGTTGAAAATTGTTTTGGTTTtgatgatgaagatgatgaAGAAACTACCAACTCTGGTGGTTGA
Protein Sequence: MIISVNNVASNELGRNTETKTTTPPPPPKRIRNPQPIDKTRMTAANITYLIDDKPTMSENDALPEGTTIVLDSGSSENTMTIDGIKLEPSTSGTENITDIQNYLDSFNKEIEGNEVTQVTTDGDSVEHTYFIDQNVQYYYQTTTGDGQMVMVGGLSEHDAQIMADTNENNIDNVTQIVLPGQQDKIKKEIPQIVALADGTVTLVQTETEPNNYVLYVVKQPNEKNEETSNISMEISQDDPDPDDPDVSNVYDFNDGEDPTNSKKLDVVESGEEDDKSKISKLTPKKSQTVTQAHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHVNTHTGTKPYQCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICFSRFTQSNSLKTHRLIHSGEKPVFKCEHCPATCGRRTDLRIHVQKLHTSDKPIKCKRCGEAFPDRYQYKVHCKSHEGEKCYKCELCPYASMSQRHLETHMLIHTDEKPFHCKLCDQSFRQKQLLRRHHNLYHNPAYIPPLPHEKPHQCNTCQRSFRHKGNLLRHMEVHMQESTGNDRNIAIKQRLEYTDSANEDESEEDTSIPTRETGVVAVEGDDGHQYVVLEVIQLDGQEQVDNYSSTNVSIQQVDQSSSPSQKDLTILKTASLSDVKEECGDGVENCFGFDDEDDEETTNSGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184818;
90% Identity: iTF_01329223;
80% Identity: -